Oat-rs1 Pseudogene Detail

Summary

• Symbol
  Oat-rs1
• Name
  ornithine aminotransferase related sequence 1

• Feature Type
  pseudogene
• IDs
  MGI:97395
  NCBI Gene: 635275
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:74958822-74960132 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.30 cM
• Mapping Data
  7 experiments

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97395	pseudogene	ChrX:74958704-74960447 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014526	pseudogene	ChrX:71773457-71774768 (+)
A/J	MGP_AJ_G0014536	pseudogene	ChrX:71996993-71998304 (+)
AKR/J	MGP_AKRJ_G0014463	pseudogene	ChrX:73844363-73845674 (+)
BALB/cJ	MGP_BALBcJ_G0014489	pseudogene	ChrX:70997158-70998469 (+)
C3H/HeJ	MGP_C3HHeJ_G0014322	pseudogene	ChrX:72267053-72268364 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014960	pseudogene	ChrX:74077275-74078585 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012708	pseudogene	ChrX:71519565-71520882 (+)
CAST/EiJ	MGP_CASTEiJ_G0013954	pseudogene	ChrX:57570762-57572066 (+)
CBA/J	MGP_CBAJ_G0014307	pseudogene	ChrX:76014807-76016118 (+)
DBA/2J	MGP_DBA2J_G0014389	pseudogene	ChrX:71465162-71466473 (+)
FVB/NJ	MGP_FVBNJ_G0014379	pseudogene	ChrX:70734013-70735324 (+)
LP/J	MGP_LPJ_G0014484	pseudogene	ChrX:72583698-72585009 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014420	pseudogene	ChrX:78705651-78706962 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014931	pseudogene	ChrX:71638316-71639627 (+)
PWK/PhJ	MGP_PWKPhJ_G0013758	pseudogene	ChrX:55593115-55594426 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013560	pseudogene	ChrX:58399648-58400963 (+)
WSB/EiJ	MGP_WSBEiJ_G0014028	pseudogene	ChrX:70838263-70839574 (+)

Homology

• Gene Tree
  Oat-rs1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000083544 (Evidence)
• NCBI Gene
  635275

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083544	Ensembl Gene Model | MGI Sequence Detail	1311	C57BL/6J
transcript	ENSMUST00000122186	Ensembl | MGI Sequence Detail	1311	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-12965, MGI:3647069, MGI:3779683

References

• Summaries
  All 9
• Earliest
  J:515 Ramesh V, et al., Mapping of ornithine aminotransferase gene sequences to mouse chromosomes 7, X, and 3. Mamm Genome. 1992;3(1):17-22
• Latest
  J:56825 Kozak CA, et al., Identification and genetic mapping of differentially expressed genes in mice differing at the If1 interferon regulatory locus. Mamm Genome. 1999 Sep;10(9):853-7

TSS for Oat-rs1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161359	ChrX:74958710-74958718 (+)	-108 bp