Ncf2-rs Pseudogene Detail

Summary

• Symbol
  Ncf2-rs
• Name
  neutrophil cytosolic factor 2 related sequence
• Synonyms
  Gm9025, Ncf-2rs

• Feature Type
  pseudogene
• IDs
  MGI:97285
  NCBI Gene: 668181
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:112018786-112020953 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.63 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97285	pseudogene	Chr13:112018786-112020953 (-)
129S1/SvImJ	ENSMUSG00200032721	pseudogene	Chr13:106479587-106481368 (-)
129S1/SvImJ	ENSMUSG00200032745	pseudogene	Chr13:106479584-106481368 (-)
A/J	ENSMUSG00195013504	pseudogene	Chr13:106983878-106985664 (-)
A/J	ENSMUSG00195013488	pseudogene	Chr13:106983881-106985664 (-)
AKR/J	ENSMUSG00220030682	pseudogene	Chr13:105430495-105432276 (-)
AKR/J	ENSMUSG00220030744	pseudogene	Chr13:105430492-105432276 (-)
BALB/cJ	ENSMUSG00180030406	pseudogene	Chr13:107580518-107582299 (-)
BALB/cJ	ENSMUSG00180030445	pseudogene	Chr13:107580515-107582299 (-)
C3H/HeJ	ENSMUSG00175027310	pseudogene	Chr13:107658328-107660109 (-)
C3H/HeJ	ENSMUSG00175027340	pseudogene	Chr13:107658325-107660109 (-)
C57BL/6NJ	ENSMUSG00215026339	pseudogene	Chr13:107677316-107679097 (-)
C57BL/6NJ	ENSMUSG00215026469	pseudogene	Chr13:107677313-107679097 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009313	pseudogene	Chr1:143550962-143581430 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210010838	pseudogene	Chr13:106995946-106997730 (-)
CBA/J	ENSMUSG00210010829	pseudogene	Chr13:106995949-106997730 (-)
DBA/2J	ENSMUSG00185031159	pseudogene	Chr13:110749855-110751636 (-)
DBA/2J	ENSMUSG00185031193	pseudogene	Chr13:110749852-110751636 (-)
FVB/NJ	ENSMUSG00205007047	pseudogene	Chr13:106430359-106432140 (-)
FVB/NJ	ENSMUSG00205007058	pseudogene	Chr13:106430356-106432140 (-)
JF1/MsJ	ENSUMUG00000013381	pseudogene	Chr13:110216467-110218250 (-)
JF1/MsJ	ENSUMUG00000013417	pseudogene	Chr13:110216464-110218250 (-)
LP/J	ENSMUSG00230013025	pseudogene	Chr13:120948597-120950381 (-)
LP/J	ENSMUSG00230012995	pseudogene	Chr13:120948600-120950381 (-)
NOD/ShiLtJ	ENSMUSG00190020394	pseudogene	Chr13:107273003-107274786 (-)
NOD/ShiLtJ	ENSMUSG00190020420	pseudogene	Chr13:107273000-107274786 (-)
NZO/HlLtJ	ENSMUSG00225031588	pseudogene	Chr13:113139496-113141282 (-)
NZO/HlLtJ	ENSMUSG00225031562	pseudogene	Chr13:113139499-113141282 (-)
PWK/PhJ	ENSLUMG00010010667	pseudogene	Chr13:106244768-106246551 (-)
PWK/PhJ	ENSLUMG00010010680	pseudogene	Chr13:106244765-106246551 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005009285	pseudogene	Chr13:106446769-106448550 (-)
WSB/EiJ	ENSIUOG00005009297	pseudogene	Chr13:106446766-106448550 (-)

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000082433 (Evidence), ENSMUSG00000114429 (Evidence)
• NCBI Gene
  668181

Representative Sequences			Length	Strain/Species
genomic	668181	NCBI Gene Model | MGI Sequence Detail	2168	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-12791, MGD-MRK-12794, MGI:3646679

References

• Summaries
  All 9
• Earliest
  J:10699 Francke U, et al., Genes for two autosomal recessive forms of chronic granulomatous disease assigned to 1q25 (NCF2) and 7q11.23 (NCF1). Am J Hum Genet. 1990 Sep;47(3):483-92
• Latest
  J:38568 Misumi DJ, et al., The physical and genetic map surrounding the Lyst gene on mouse chromosome 13. Genomics. 1997 Feb 15;40(1):147-50

TSS for Ncf2-rs:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124041	Chr13:112020894-112020910 (-)	51 bp
Tssr124040	Chr13:112020846-112020867 (-)	96 bp