Ldha-ps Pseudogene Detail

Summary

• Symbol
  Ldha-ps
• Name
  lactate dehydrogenase A, pseudogene
• Synonyms
  Ldh-1ps

• Feature Type
  pseudogene
• IDs
  MGI:96760
  NCBI Gene: 16829
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:59964399-59965393 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 34.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96760	pseudogene	Chr2:59964315-59965878 (+)
129S1/SvImJ	ENSMUSG00200002894	pseudogene	Chr2:57033500-57034494 (+)
A/J	ENSMUSG00195005216	pseudogene	Chr2:57150591-57151585 (+)
AKR/J	ENSMUSG00220007365	pseudogene	Chr2:57252557-57253551 (+)
BALB/cJ	ENSMUSG00180020978	pseudogene	Chr2:57106844-57107838 (+)
C3H/HeJ	ENSMUSG00175013787	pseudogene	Chr2:57175678-57176672 (+)
C57BL/6NJ	ENSMUSG00215009042	pseudogene	Chr2:57160254-57161248 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023166	pseudogene	Chr2:56509113-56510106 (+)
CBA/J	ENSMUSG00210034960	pseudogene	Chr2:57194794-57195788 (+)
DBA/2J	ENSMUSG00185008404	pseudogene	Chr2:57050862-57051856 (+)
FVB/NJ	ENSMUSG00205021668	pseudogene	Chr2:56691496-56692490 (+)
JF1/MsJ	ENSUMUG00000022928	pseudogene	Chr2:56745662-56746655 (+)
LP/J	ENSMUSG00230001887	pseudogene	Chr2:58917253-58918247 (+)
NOD/ShiLtJ	ENSMUSG00190044276	pseudogene	Chr2:57140107-57141101 (+)
NZO/HlLtJ	ENSMUSG00225001187	pseudogene	Chr2:66639496-66640490 (+)
PWK/PhJ	ENSLUMG00010005617	pseudogene	Chr2:56908812-56909805 (+)
SPRET/EiJ	ENSMSPG00010012038	pseudogene	Chr2:58075332-58076326 (+)
WSB/EiJ	ENSIUOG00005028441	pseudogene	Chr2:57179322-57180316 (+)

Homology

• Gene Tree
  Ldha-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ldha-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082330 (Evidence)
• NCBI Gene
  16829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082330	Ensembl Gene Model | MGI Sequence Detail	995	C57BL/6J
transcript	ENSMUST00000119390	Ensembl | MGI Sequence Detail	995	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-11763, MGD-MRK-11769

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:9098 Fukasawa KM, et al., Molecular evolution of mammalian lactate dehydrogenase-A genes and pseudogenes: association of a mouse processed pseudogene with a B1 repetitive sequence. Mol Biol Evol. 1986 Jul;3(4):330-42
• Latest
  J:8625 Fukasawa KM, et al., Molecular nature of spontaneous mutations in mouse lactate dehydrogenase-A processed pseudogenes. Genetics. 1987 Jan;115(1):177-84