Stmn1-rs2 Pseudogene Detail

Summary

• Symbol
  Stmn1-rs2
• Name
  stathmin 1, related sequence 2
• Synonyms
  Gm6393, Lag-rs2

• Feature Type
  pseudogene
• IDs
  MGI:96741
  NCBI Gene: 623112
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:70699592-70700564 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 41.17 cM
• Mapping Data
  5 experiments

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96741	pseudogene	Chr17:70699592-70700564 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  623112

Representative Sequences			Length	Strain/Species
genomic	623112	NCBI Gene Model | MGI Sequence Detail	973	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Other 1

Other
Accession IDs

MGD-MRK-11731, MGI:3648317

References

• Summaries
  All 9
• Earliest
  J:15564 Okazaki T, et al., Molecular diversity of the SCG10/stathmin gene family in the mouse [published erratum appears in Genomics 1994 May 1;21(1):298]. Genomics. 1993 Nov;18(2):360-73
• Latest
  J:78665 Kirstein SL, et al., Quantitative trait loci affecting initial sensitivity and acute functional tolerance to ethanol-induced ataxia and brain cAMP signaling in BXD recombinant inbred mice. J Pharmacol Exp Ther. 2002 Sep;302(3):1238-45

TSS for Stmn1-rs2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149187	Chr17:70700551-70700555 (-)	11 bp