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Igkv13-84 Gene Detail
Summary
  • Symbol
    Igkv13-84
  • Name
    immunoglobulin kappa chain variable 13-84
  • Synonyms
    Igk-V33
Location &
Maps
more
  • Sequence Map
    Chr6:68916586-68917051 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.34 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96514
 gene segment Chr6:68916586-68917051 (+)
129S1/SvImJ ENSMUSG00200014072
 gene segment Chr6:65823047-65823512 (+)
A/J ENSMUSG00195043281
 gene segment Chr6:65575962-65576427 (+)
AKR/J ENSMUSG00220045969
 gene segment Chr6:64994547-64995012 (+)
BALB/cJ ENSMUSG00180042544
 gene segment Chr6:65931840-65932305 (+)
C3H/HeJ ENSMUSG00175012596
 gene segment Chr6:111518011-111518476 (-)
C57BL/6NJ ENSMUSG00215043398
 gene segment Chr6:65906396-65906861 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005039125
 gene segment Chr6:66380334-66380796 (+)
CBA/J ENSMUSG00210042919
 gene segment Chr6:65729241-65729706 (+)
DBA/2J ENSMUSG00185046216
 gene segment Chr6:66292472-66292937 (+)
FVB/NJ ENSMUSG00205042448
 gene segment Chr6:65716300-65716765 (+)
JF1/MsJ ENSUMUG00000044133
 gene segment Chr6:65549051-65549516 (+)
LP/J ENSMUSG00230026874
 gene segment Chr6:67414787-67415252 (+)
NOD/ShiLtJ ENSMUSG00190041628
 gene segment Chr6:65489948-65490413 (+)
NZO/HlLtJ ENSMUSG00225019518
 gene segment Chr6:69383100-69383565 (+)
PWK/PhJ ENSLUMG00010020664
 gene segment Chr6:64935235-64935700 (+)
SPRET/EiJ ENSMSPG00010025756
 gene segment Chr6:67043933-67044398 (+)
WSB/EiJ ENSIUOG00005025329
 gene segment Chr6:66648824-66649289 (+)



Homology
more
  • Human Ortholog
    IGKV1-27, immunoglobulin kappa variable 1-27
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV1-27, immunoglobulin kappa variable 1-27
  • Synonyms
    A20, IGKV127
  • Links
    NCBI Gene ID: 28935
    UniProt: A0A075B6S5

  • Chr Location
    2p11.2; chr2:89213423-89213928 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 692152 NCBI Gene Model | MGI Sequence Detail 466 C57BL/6J ±  kb
transcript M35157 GenBank | ENA | DDBJ | MGI Sequence Detail 405 Not Specified  
polypeptide A0A140T8N3 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR003599 Immunoglobulin domain subtype
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 17
    Genomic 7
    cDNA 2
    Primer pair 1
    Other 7
Other
Accession IDs
less
MGD-MRK-11317
References
more
  • Summaries
    All 15
    Gene Ontology 2
  • Earliest
    J:10769 D'Hoostelaere LA, et al., Characterization of new mouse V kappa groups. J Immunol. 1990 Oct 15;145(8):2706-12
  • Latest
    J:55926 Isobe T, et al., F. Genetic Strains Research Center. Analysis of the genetic structure of Pb hotspot in the Class II of MHC. Natl Inst Genet Jpn Annual Report. 1997;48:87-101
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory