Hsp25-ps1 Pseudogene Detail

Summary

• Symbol
  Hsp25-ps1
• Name
  heat shock protein 25, pseudogene 1
• Synonyms
  25kDa, ENSMUSG00000007852

• Feature Type
  pseudogene
• IDs
  MGI:96241
  NCBI Gene: 15508
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:45231974-45232603 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 21.73 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96241	pseudogene	Chr13:45231846-45232660 (-)
129S1/SvImJ	ENSMUSG00200036813	pseudogene	Chr13:42480051-42480680 (-)
A/J	ENSMUSG00195029956	pseudogene	Chr13:41540190-41540819 (-)
AKR/J	ENSMUSG00220009832	pseudogene	Chr13:41347406-41348035 (-)
BALB/cJ	ENSMUSG00180008940	pseudogene	Chr13:41846732-41847361 (-)
C3H/HeJ	ENSMUSG00175030256	pseudogene	Chr13:41811048-41811677 (-)
C57BL/6NJ	ENSMUSG00215006744	pseudogene	Chr13:41975725-41976354 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210028743	pseudogene	Chr13:41816588-41817217 (-)
DBA/2J	ENSMUSG00185032681	pseudogene	Chr13:42630813-42631442 (-)
FVB/NJ	ENSMUSG00205013786	pseudogene	Chr13:41568490-41569119 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230030832	pseudogene	Chr13:51948895-51949524 (-)
NOD/ShiLtJ	ENSMUSG00190012390	pseudogene	Chr13:42029739-42030368 (-)
NZO/HlLtJ	ENSMUSG00225036415	pseudogene	Chr13:45716041-45716670 (-)
PWK/PhJ	ENSLUMG00010022081	pseudogene	Chr13:41004080-41004709 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027876	pseudogene	Chr13:41152432-41153061 (-)

Homology

• Gene Tree
  Hsp25-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Hsp25-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000078915 (Evidence)
• NCBI Gene
  15508

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078915	Ensembl Gene Model | MGI Sequence Detail	630	C57BL/6J
transcript	ENSMUST00000109187	Ensembl | MGI Sequence Detail	630	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

Other
Accession IDs

MGD-MRK-10955, MGI:3642833

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Hsp25-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122301	Chr13:45232659-45232667 (-)	-60 bp