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Hmgb1-ps9 Pseudogene Detail
Summary
  • Symbol
    Hmgb1-ps9
  • Name
    high mobility group box 1, pseudogene 9
  • Synonyms
    Hmg1-rs3, Hmg-1RV-B, Hmgb1-rs3
Location &
Maps
more
  • Sequence Map
    Chr13:101175110-101175754 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 53.23 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    147 from dbSNP Build 142
  • Strain Annotations
    19
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96115
 pseudogene Chr13:101174159-101176629 (-)
129S1/SvImJ ENSMUSG00200009014
 pseudogene Chr13:95610038-95610663 (-)
A/J ENSMUSG00195030091
 pseudogene Chr13:96207466-96208091 (-)
AKR/J ENSMUSG00220029336
 pseudogene Chr13:94630188-94630832 (-)
BALB/cJ ENSMUSG00180039139
 pseudogene Chr13:96753003-96753647 (-)
C3H/HeJ ENSMUSG00175017629
 pseudogene Chr13:96851466-96852110 (-)
C57BL/6NJ ENSMUSG00215035505
 pseudogene Chr13:96818385-96819029 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J ENSMUSG00210011977
 pseudogene Chr13:96175089-96175733 (-)
DBA/2J ENSMUSG00185019433
 pseudogene Chr13:99919102-99919746 (-)
FVB/NJ ENSMUSG00205037777
 pseudogene Chr13:95550048-95550692 (-)
JF1/MsJ ENSUMUG00000027113
 pseudogene Chr13:99534171-99534815 (-)
JF1/MsJ ENSUMUG00000004235
 pseudogene Chr3:54441164-54441799 (-)
JF1/MsJ ENSUMUG00000031672
 pseudogene Chr8:27980156-27980800 (+)
LP/J ENSMUSG00230038380
 pseudogene Chr13:110079903-110080528 (-)
NOD/ShiLtJ ENSMUSG00190044044
 pseudogene Chr13:96512269-96512894 (-)
NZO/HlLtJ ENSMUSG00225037596
 pseudogene Chr13:102433639-102434283 (-)
PWK/PhJ ENSLUMG00010025525
 pseudogene Chr13:95563703-95564347 (-)
PWK/PhJ ENSLUMG00010007047
 pseudogene Chr4:39322189-39322833 (-)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005036986
 pseudogene Chr13:95586244-95586869 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096722 Ensembl Gene Model | MGI Sequence Detail 645 C57BL/6J ±  kb
transcript ENSMUST00000179479 Ensembl | MGI Sequence Detail 645 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGD-MRK-10751
References
more
  • Summaries
    All 6
  • Earliest
    J:16826 Pauken CM, et al., Molecular cloning, expression analysis, and chromosomal localization of mouse Hmg1-containing sequences. Mamm Genome. 1994 Feb;5(2):91-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory