Vis1 Gene Detail

Summary

• Symbol
  Vis1
• Name
  viral integration site 1
• Synonyms
  Gm27276, His-1, His1

• Feature Type
  lncRNA gene
• IDs
  MGI:96091
  NCBI Gene: 110153
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:45128955-45172925 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  5 experiments

Strain
Comparison

• SNPs within 2kb
  1073 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96091	lncRNA gene	Chr2:45087702-45328473 (+)
129S1/SvImJ	ENSMUSG00200011363	lncRNA gene	Chr2:42144437-42184062 (+)
A/J	ENSMUSG00195010229	lncRNA gene	Chr2:42237109-42276729 (+)
AKR/J	ENSMUSG00220020813	lncRNA gene	Chr2:42384727-42426237 (+)
BALB/cJ	ENSMUSG00180021804	lncRNA gene	Chr2:42244547-42284278 (+)
C3H/HeJ	ENSMUSG00175014348	lncRNA gene	Chr2:42231324-42270943 (+)
C57BL/6NJ	ENSMUSG00215014912	lncRNA gene	Chr2:42284386-42324105 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001655	lncRNA gene	Chr2:41889405-41929146 (+)
CBA/J	ENSMUSG00210001128	lncRNA gene	Chr2:42285281-42324886 (+)
DBA/2J	ENSMUSG00185002658	lncRNA gene	Chr2:42145364-42184980 (+)
FVB/NJ	ENSMUSG00205001908	lncRNA gene	Chr2:41921741-41961362 (+)
JF1/MsJ	ENSUMUG00000000594	lncRNA gene	Chr2:41968670-42008691 (+)
LP/J	ENSMUSG00230000756	lncRNA gene	Chr2:44067084-44106808 (+)
NOD/ShiLtJ	ENSMUSG00190002316	lncRNA gene	Chr2:42123949-42163562 (+)
NZO/HlLtJ	ENSMUSG00225000957	lncRNA gene	Chr2:51776592-51816213 (+)
PWK/PhJ	ENSLUMG00010004694	lncRNA gene	Chr2:42149631-42189252 (+)
SPRET/EiJ	ENSMSPG00010011136	lncRNA gene	Chr2:43014606-43054181 (+)
WSB/EiJ	ENSIUOG00005001243	lncRNA gene	Chr2:42143425-42183164 (+)

Homology

• Gene Tree
  Vis1
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  5

• Ensembl
  ENSMUSG00000120385 (Evidence)
• NCBI Gene
  110153

Representative Sequences			Length	Strain/Species
genomic	110153	NCBI Gene Model | MGI Sequence Detail	43971	C57BL/6J
transcript	U09772	GenBank | ENA | DDBJ | MGI Sequence Detail	3053	SJL/J

Molecular
Reagents

• All nucleic 2

  Genomic 1

  Other 1

Other
Accession IDs

MGD-MRK-10721, MGD-MRK-10723, MGI:5530658

References

• Summaries
  All 13
• Earliest
  J:1773 Askew DS, et al., His-1 and His-2: identification and chromosomal mapping of two commonly rearranged sites of viral integration in a myeloid leukemia. Oncogene. 1991 Nov;6(11):2041-7
• Latest
  J:39277 Li J, et al., Expression of the putative proto-oncogene His-1 in normal and neoplastic tissues. Am J Pathol. 1997 Apr;150(4):1297-305

TSS for Vis1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17643	Chr2:45129302-45129316 (+)	354 bp
Tssr17645	Chr2:45167042-45167102 (+)	38,117 bp