H2-M6-ps Pseudogene Detail

Summary

• Symbol
  H2-M6-ps
• Name
  histocompatibility 2, M region locus 6, pseudogene
• Synonyms
  H2-M6, H-2M6

• Feature Type
  pseudogene
• IDs
  MGI:95918
  NCBI Gene: 14994
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:37280099-37282288 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.16 cM
• Mapping Data
  5 experiments

Strain
Comparison

• Strain Annotations
  19
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_95918	pseudogene	Chr17:37280087-37282288 (-)
129S1/SvImJ	ENSMUSG00200052458	pseudogene	Chr17:32734613-32736808 (-)
A/J	ENSMUSG00195046869	pseudogene	Chr17:33943314-33945500 (-)
AKR/J	ENSMUSG00220052178	pseudogene	Chr17:32675982-32678176 (-)
BALB/cJ	ENSMUSG00180044838	pseudogene	Chr17:33424211-33426407 (-)
C3H/HeJ	ENSMUSG00175046230	pseudogene	Chr17:32616519-32618713 (-)
C57BL/6NJ	ENSMUSG00215054129	pseudogene	Chr17:32578434-32580636 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037212	pseudogene	Chr17:33964123-33966317 (-)
CAST/EiJ	ENSTCUG00005052241	pseudogene	Chr17:33814708-33816894 (-)
CBA/J	ENSMUSG00210052216	pseudogene	Chr17:32352737-32354931 (-)
DBA/2J	ENSMUSG00185055445	pseudogene	Chr17:35405150-35407346 (-)
FVB/NJ	ENSMUSG00205053669	pseudogene	Chr17:32938242-32940428 (-)
JF1/MsJ	ENSUMUG00000057523	pseudogene	Chr17:34347023-34349218 (-)
LP/J	ENSMUSG00230054824	pseudogene	Chr17:36529474-36531669 (-)
NOD/ShiLtJ	ENSMUSG00190053739	pseudogene	Chr17:32618527-32620713 (-)
NZO/HlLtJ	ENSMUSG00225055000	pseudogene	Chr17:38485584-38487770 (-)
PWK/PhJ	ENSLUMG00010045602	pseudogene	Chr17:32227267-32229460 (-)
SPRET/EiJ	ENSMSPG00010050836	pseudogene	Chr17:33486551-33488752 (-)
WSB/EiJ	ENSIUOG00005052333	pseudogene	Chr17:33445979-33448166 (-)

Homology

• Gene Tree
  H2-M6-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving H2-M6-ps
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000083534 (Evidence)
• NCBI Gene
  14994

Representative Sequences			Length	Strain/Species
genomic	14994	NCBI Gene Model | MGI Sequence Detail	2190	C57BL/6J

Molecular
Reagents

• All nucleic 7

  Genomic 5

  Other 2

Other
Accession IDs

MGD-MRK-10403, MGD-MRK-10514

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:13181 Wang CR, et al., Organization and structure of the H-2M4-M8 class I genes in the mouse major histocompatibility complex. Immunogenetics. 1993;38(4):258-71
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for H2-M6-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147996	Chr17:37281501-37281512 (-)	781 bp