Csnk2a1-ps2 Pseudogene Detail

Summary

• Symbol
  Csnk2a1-ps2
• Name
  casein kinase 2, alpha 1 polypeptide, pseudogene 2
• Synonyms
  Csnk2a1-ps, EG668993

• Feature Type
  pseudogene
• IDs
  MGI:88545
  NCBI Gene: 668993
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:16476491-16477665 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 11.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_88545	pseudogene	ChrX:16476257-16478952 (+)
129S1/SvImJ	ENSMUSG00200015935	pseudogene	ChrX:11239362-11240536 (+)
A/J	ENSMUSG00195007564	pseudogene	ChrX:11213006-11214180 (+)
AKR/J	ENSMUSG00220018232	pseudogene	ChrX:10761306-10762480 (+)
BALB/cJ	ENSMUSG00180022795	pseudogene	ChrX:11204538-11205712 (+)
C3H/HeJ	ENSMUSG00175029758	pseudogene	ChrX:11227042-11228216 (+)
C57BL/6NJ	ENSMUSG00215020798	pseudogene	ChrX:11826862-11828036 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012540	pseudogene	ChrX:10113652-10114821 (+)
CAST/EiJ	ENSTCUG00005027495	pseudogene	ChrX:11156307-11157481 (+)
CBA/J	ENSMUSG00210020780	pseudogene	ChrX:11268221-11269395 (+)
DBA/2J	ENSMUSG00185036523	pseudogene	ChrX:17868775-17869949 (+)
FVB/NJ	ENSMUSG00205024273	pseudogene	ChrX:10923044-10924218 (+)
JF1/MsJ	ENSUMUG00000028642	pseudogene	ChrX:31698329-31699502 (+)
LP/J	ENSMUSG00230007100	pseudogene	ChrX:22438353-22439527 (+)
NOD/ShiLtJ	ENSMUSG00190029337	pseudogene	ChrX:11237416-11238590 (+)
NZO/HlLtJ	ENSMUSG00225033656	pseudogene	ChrX:27672839-27674013 (+)
PWK/PhJ	ENSLUMG00010016732	pseudogene	ChrX:11103473-11104646 (+)
SPRET/EiJ	ENSMSPG00010010843	pseudogene	ChrX:12148719-12149891 (+)
WSB/EiJ	ENSIUOG00005016713	pseudogene	ChrX:7856230-7857404 (+)

Homology

• Gene Tree
  Csnk2a1-ps2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000083288 (Evidence)
• NCBI Gene
  668993

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083288	Ensembl Gene Model | MGI Sequence Detail	1175	C57BL/6J
transcript	ENSMUST00000118846	Ensembl | MGI Sequence Detail	1175	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-2203, MGI:3645160, MGI:6456207

References

• Summaries
  All 8
• Earliest
  J:1588 Boldyreff B, et al., Identification of four genomic loci highly related to casein-kinase-2-alpha cDNA and characterization of a casein kinase-2-alpha pseudogene within the mouse genome. Biochem Biophys Res Commun. 1992 Jul 31;186(2):723-30
• Latest
  J:23127 Hoffmann U, et al., Characterization of the cDNA and three processed pseudogenes from the murine protein kinase CK2 alpha subunit. Biochim Biophys Acta. 1995 Feb 21;1260(3):337-40