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Cdr1 Gene Detail
Summary
  • Symbol
    Cdr1
  • Name
    cerebellar degeneration related antigen 1
  • Synonyms
    Cdr34, Gm2409, Gm7077
Location &
Maps
more
  • Sequence Map
    ChrX:60227611-60229164 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.33 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88359
 protein coding gene ChrX:60226838-60239449 (-)
129S1/SvImJ ENSMUSG00200016046
 lncRNA gene ChrX:42480897-42482450 (-)
A/J ENSMUSG00195009472
 lncRNA gene ChrX:46007172-46008725 (-)
AKR/J ENSMUSG00220024595
 lncRNA gene ChrX:41559074-41560627 (-)
BALB/cJ ENSMUSG00180007060
 lncRNA gene ChrX:42627860-42629413 (-)
C3H/HeJ ENSMUSG00175009258
 lncRNA gene ChrX:46191864-46193417 (-)
C57BL/6NJ ENSMUSG00215008071
 lncRNA gene ChrX:42786739-42788292 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033110
 protein coding gene ChrX:56575146-56577260 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210018745
 lncRNA gene ChrX:42987197-42988750 (-)
DBA/2J ENSMUSG00185036340
 lncRNA gene ChrX:55273059-55274612 (-)
FVB/NJ ENSMUSG00205009224
 lncRNA gene ChrX:42605698-42607251 (-)
JF1/MsJ ENSUMUG00000028679
 lncRNA gene ChrX:76212987-76214689 (-)
LP/J ENSMUSG00230019037
 lncRNA gene ChrX:61829939-61831492 (-)
NOD/ShiLtJ ENSMUSG00190013733
 lncRNA gene ChrX:42290611-42292164 (-)
NZO/HlLtJ ENSMUSG00225032396
 lncRNA gene ChrX:67075428-67076981 (-)
PWK/PhJ ENSLUMG00010027019
 lncRNA gene ChrX:42148065-42149660 (-)
SPRET/EiJ ENSMSPG00010004640
 lncRNA gene ChrX:44879976-44881605 (-)
WSB/EiJ ENSIUOG00005012136
 lncRNA gene ChrX:43324220-43325773 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    604
  • Tissues
    2
  • cDNA Data
    5
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090546 Ensembl Gene Model | MGI Sequence Detail 1554 C57BL/6J ±  kb
transcript ENSMUST00000166381 Ensembl | MGI Sequence Detail 1554 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Other 1
    Antibodies 1
Other
Accession IDs
less
MGD-MRK-1886, MGD-MRK-1887, MGI:3644361, MGI:3780577
References
more
  • Summaries
    All 18
    Developmental Gene Expression 2
  • Earliest
    J:10431 Chen YT, et al., Cerebellar degeneration-related antigen: a highly conserved neuroectodermal marker mapped to chromosomes X in human and mouse. Proc Natl Acad Sci U S A. 1990 Apr;87(8):3077-81
  • Latest
    J:307672 Knupp D, et al., NOVA2 regulates neural circRNA biogenesis. Nucleic Acids Res. 2021 Jul 9;49(12):6849-6862
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory