Akp-ps1 Pseudogene Detail

Summary

• Symbol
  Akp-ps1
• Name
  alkaline phosphatase pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:87981
  NCBI Gene: 208256
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:86995754-86998724 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_87981	pseudogene	Chr1:86995752-86998727 (+)
129S1/SvImJ	ENSMUSG00200037997	pseudogene	Chr1:84235839-84239265 (+)
A/J	ENSMUSG00195035061	pseudogene	Chr1:83796309-83799735 (+)
AKR/J	ENSMUSG00220045240	pseudogene	Chr1:83914893-83918319 (+)
BALB/cJ	ENSMUSG00180017506	pseudogene	Chr1:84084382-84087808 (+)
C3H/HeJ	ENSMUSG00175001624	pseudogene	Chr1:83970710-83974136 (+)
C57BL/6NJ	ENSMUSG00215036721	pseudogene	Chr1:83886268-83889694 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037029	pseudogene	Chr1:79558330-79561354 (+)
CAST/EiJ	ENSTCUG00005007660	pseudogene	Chr1:83540354-83543837 (+)
CBA/J	ENSMUSG00210012448	pseudogene	Chr1:83808646-83812072 (+)
DBA/2J	ENSMUSG00185017656	pseudogene	Chr1:88280628-88284054 (+)
FVB/NJ	ENSMUSG00205042164	pseudogene	Chr1:83230341-83233767 (+)
JF1/MsJ	ENSUMUG00000019169	pseudogene	Chr1:87048655-87052133 (+)
LP/J	ENSMUSG00230022421	pseudogene	Chr1:87565405-87568831 (+)
NOD/ShiLtJ	ENSMUSG00190033637	pseudogene	Chr1:83863900-83867326 (+)
NZO/HlLtJ	ENSMUSG00225004750	pseudogene	Chr1:91468111-91471537 (+)
PWK/PhJ	ENSLUMG00010048333	pseudogene	Chr1:83430746-83434214 (+)
SPRET/EiJ	ENSMSPG00010047642	pseudogene	Chr1:85448144-85451624 (+)
WSB/EiJ	ENSIUOG00005044061	pseudogene	Chr1:83466040-83469466 (+)

Homology

• Gene Tree
  Akp-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Akp-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000101940 (Evidence)
• NCBI Gene
  208256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101940	Ensembl Gene Model | MGI Sequence Detail	2971	C57BL/6J
transcript	ENSMUST00000188050	Ensembl | MGI Sequence Detail	1600	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-1252, MGI:3643791

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:126965 Narisawa S, et al., A novel phosphatase upregulated in Akp3 knockout mice. Am J Physiol Gastrointest Liver Physiol. 2007 Nov;293(5):G1068-77

TSS for Akp-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7778	Chr1:86995723-86995740 (+)	-22 bp