Gm60204 Gene Detail

Summary

• Symbol
  Gm60204
• Name
  predicted gene, 60204

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:7803461
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:53570007-53575755 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7803461	lncRNA gene	Chr13:53570007-53575755 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm60204
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Sequences &
Gene Models

• All Sequences
  10
• UniProt
  1

• Ensembl
  ENSMUSG00000126028 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000126028	Ensembl Gene Model | MGI Sequence Detail	5749	C57BL/6J
transcript	ENSMUST00000273990	Ensembl | MGI Sequence Detail	4420	Not Applicable
polypeptide	ENSMUSP00000160193	Ensembl | MGI Sequence Detail	1408	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039509 SPATA31
  IPR027970 SPATA31F3-like

References

• Summaries
  All 3

  Gene Ontology 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:342604 UniProt-GOA, Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt. 2012;

TSS for Gm60204:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122585	Chr13:53575680-53575698 (-)	66 bp