Gm58847 Gene Detail

Summary

• Symbol
  Gm58847
• Name
  predicted gene, 58847

• Feature Type
  lncRNA gene
• IDs
  MGI:7800773
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr18:20804619-20804974 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7800773	lncRNA gene	Chr18:20804619-20804974 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm58847
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000141955 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000141955	Ensembl Gene Model | MGI Sequence Detail	356	C57BL/6J
transcript	ENSMUST00000368207	Ensembl | MGI Sequence Detail	356	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm58847:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5254	Chr18:20803028-20803029 (+)	-1,590 bp
Tssr150183	Chr18:20803032-20803102 (+)	-1,552 bp
Tssr150184	Chr18:20803105-20803124 (+)	-1,504 bp
Tssr150185	Chr18:20803127-20803155 (+)	-1,478 bp
Tssr150186	Chr18:20804605-20804621 (+)	-6 bp