Gm57831 Gene Detail

Summary

• Symbol
  Gm57831
• Name
  predicted gene, 57831

• Feature Type
  lncRNA gene
• IDs
  MGI:7512611
  NCBI Gene: 118568508
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr2:30802089-30821190 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  625 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7512611	lncRNA gene	Chr2:30802089-30821190 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568508

Representative Sequences			Length	Strain/Species
genomic	118568508	NCBI Gene Model | MGI Sequence Detail	19102	C57BL/6J
transcript	XR_004940879	RefSeq | MGI Sequence Detail	2714	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm57831:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23411	Chr2:30822034-30822083 (-)	-869 bp
Tssr23410	Chr2:30820102-30820117 (-)	1,080 bp
Tssr23409	Chr2:30819906-30819920 (-)	1,277 bp
Tssr23408	Chr2:30819842-30819905 (-)	1,316 bp
Tssr23407	Chr2:30818964-30819010 (-)	2,203 bp
Tssr23406	Chr2:30818060-30818073 (-)	3,123 bp
Tssr23404	Chr2:30811918-30811932 (-)	9,265 bp
Tssr23403	Chr2:30810388-30810391 (-)	10,800 bp
Tssr23402	Chr2:30810292-30810317 (-)	10,885 bp
Tssr23401	Chr2:30809667-30809688 (-)	11,512 bp