Gm57476 Gene Detail

Summary

• Symbol
  Gm57476
• Name
  predicted gene, 57476

• Feature Type
  lncRNA gene
• IDs
  MGI:7338865
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:118942631-118943311 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338865	lncRNA gene	Chr2:118942631-118943311 (-)
129S1/SvImJ	ENSMUSG00200049094	lncRNA gene	Chr2:115883985-115884603 (-)
A/J	ENSMUSG00195025314	lncRNA gene	Chr2:115932544-115933162 (-)
AKR/J	ENSMUSG00220044111	lncRNA gene	Chr2:115810232-115810850 (-)
BALB/cJ	ENSMUSG00180044241	lncRNA gene	Chr2:115737642-115738259 (-)
C3H/HeJ	ENSMUSG00175027433	lncRNA gene	Chr2:116199408-116200026 (-)
C57BL/6NJ	ENSMUSG00215030139	lncRNA gene	Chr2:115859450-115860067 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017172	lncRNA gene	Chr2:115135866-115136483 (-)
CBA/J	ENSMUSG00210007526	lncRNA gene	Chr2:116040384-116041002 (-)
DBA/2J	ENSMUSG00185048024	lncRNA gene	Chr2:115734344-115734961 (-)
FVB/NJ	ENSMUSG00205044603	lncRNA gene	Chr2:114948572-114949191 (-)
JF1/MsJ	ENSUMUG00000041886	lncRNA gene	Chr2:115600258-115600875 (-)
LP/J	ENSMUSG00230023462	lncRNA gene	Chr2:117543649-117544267 (-)
NOD/ShiLtJ	ENSMUSG00190046215	lncRNA gene	Chr2:115968689-115969307 (-)
NZO/HlLtJ	ENSMUSG00225004618	lncRNA gene	Chr2:125447036-125447654 (-)
PWK/PhJ	ENSLUMG00010048016	lncRNA gene	Chr2:115506697-115507314 (-)
SPRET/EiJ	ENSMSPG00010044269	lncRNA gene	Chr2:117913246-117913867 (-)
WSB/EiJ	ENSIUOG00005028692	lncRNA gene	Chr2:115700075-115700693 (-)

Homology

• Gene Tree
  Gm57476
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121216 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121216	Ensembl Gene Model | MGI Sequence Detail	681	C57BL/6J
transcript	ENSMUST00000247485	Ensembl | MGI Sequence Detail	681	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57476:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25799	Chr2:118943229-118943250 (-)	71 bp