Gm57475 Gene Detail

Summary

• Symbol
  Gm57475
• Name
  predicted gene, 57475

• Feature Type
  lncRNA gene
• IDs
  MGI:7338863
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:25498519-25499173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338863	lncRNA gene	Chr2:25498519-25499173 (+)
129S1/SvImJ	ENSMUSG00200053549	lncRNA gene	Chr2:22482696-22483321 (+)
A/J	ENSMUSG00195050748	lncRNA gene	Chr2:22572830-22573455 (+)
AKR/J	ENSMUSG00220053725	lncRNA gene	Chr2:22690658-22691283 (+)
BALB/cJ	ENSMUSG00180054403	lncRNA gene	Chr2:22584356-22584981 (+)
C3H/HeJ	ENSMUSG00175053984	lncRNA gene	Chr2:22548503-22549128 (+)
C57BL/6NJ	ENSMUSG00215049423	lncRNA gene	Chr2:22607244-22607869 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053398	lncRNA gene	Chr2:22333803-22334428 (+)
CBA/J	ENSMUSG00210017864	lncRNA gene	Chr2:22587481-22588106 (+)
DBA/2J	ENSMUSG00185053448	lncRNA gene	Chr2:22487013-22487638 (+)
FVB/NJ	ENSMUSG00205051652	lncRNA gene	Chr2:22341318-22341943 (+)
JF1/MsJ	ENSUMUG00000056395	lncRNA gene	Chr2:22407316-22407941 (+)
LP/J	ENSMUSG00230046246	lncRNA gene	Chr2:24418682-24419307 (+)
NOD/ShiLtJ	ENSMUSG00190053474	lncRNA gene	Chr2:22577877-22578502 (+)
NZO/HlLtJ	ENSMUSG00225011412	lncRNA gene	Chr2:32169115-32169740 (+)
PWK/PhJ	ENSLUMG00010052978	lncRNA gene	Chr2:22504186-22504811 (+)
SPRET/EiJ	ENSMSPG00010046165	lncRNA gene	Chr2:23185542-23186234 (+)
WSB/EiJ	ENSIUOG00005053047	lncRNA gene	Chr2:22444903-22445525 (+)

Homology

• Gene Tree
  Gm57475
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121241 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121241	Ensembl Gene Model | MGI Sequence Detail	655	C57BL/6J
transcript	ENSMUST00000247555	Ensembl | MGI Sequence Detail	655	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57475:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16742	Chr2:25497865-25497892 (+)	-640 bp
Tssr16743	Chr2:25498536-25498563 (+)	31 bp