Gm57474 Gene Detail

Summary

• Symbol
  Gm57474
• Name
  predicted gene, 57474

• Feature Type
  lncRNA gene
• IDs
  MGI:7338861
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68208172-68208663 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338861	lncRNA gene	Chr2:68208172-68208663 (-)
129S1/SvImJ	ENSMUSG00200037210	lncRNA gene	Chr2:65276023-65276496 (-)
A/J	ENSMUSG00195022642	lncRNA gene	Chr2:65405276-65405749 (-)
AKR/J	ENSMUSG00220040466	lncRNA gene	Chr2:65372364-65372837 (-)
BALB/cJ	ENSMUSG00180042247	lncRNA gene	Chr2:65364128-65364601 (-)
C3H/HeJ	ENSMUSG00175039030	lncRNA gene	Chr2:65485168-65485641 (-)
C57BL/6NJ	ENSMUSG00215030655	lncRNA gene	Chr2:65303427-65303900 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009648	lncRNA gene	Chr2:64767635-64768109 (-)
CBA/J	ENSMUSG00210037971	lncRNA gene	Chr2:65525464-65525937 (-)
DBA/2J	ENSMUSG00185042183	lncRNA gene	Chr2:65363810-65364283 (-)
FVB/NJ	ENSMUSG00205037649	lncRNA gene	Chr2:64828914-64829387 (-)
JF1/MsJ	ENSUMUG00000006747	lncRNA gene	Chr2:65012619-65013092 (-)
LP/J	ENSMUSG00230023528	lncRNA gene	Chr2:67164934-67165407 (-)
NOD/ShiLtJ	ENSMUSG00190039696	lncRNA gene	Chr2:65449500-65449973 (-)
NZO/HlLtJ	ENSMUSG00225015564	lncRNA gene	Chr2:74901578-74902051 (-)
PWK/PhJ	ENSLUMG00010033492	lncRNA gene	Chr2:65212905-65213377 (-)
SPRET/EiJ	ENSMSPG00010037485	lncRNA gene	Chr2:66560209-66560683 (-)
WSB/EiJ	ENSIUOG00005020418	lncRNA gene	Chr2:65497285-65497758 (-)

Homology

• Gene Tree
  Gm57474
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121257 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121257	Ensembl Gene Model | MGI Sequence Detail	492	C57BL/6J
transcript	ENSMUST00000247630	Ensembl | MGI Sequence Detail	492	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24404	Chr2:68208634-68208677 (-)	7 bp