Gm57470 Gene Detail

Summary

• Symbol
  Gm57470
• Name
  predicted gene, 57470

• Feature Type
  lncRNA gene
• IDs
  MGI:7338853
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:59942987-59944133 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338853	lncRNA gene	Chr2:59942987-59944133 (-)
129S1/SvImJ	ENSMUSG00200002872	lncRNA gene	Chr2:57012054-57013200 (-)
A/J	ENSMUSG00195005208	lncRNA gene	Chr2:57129174-57130320 (-)
AKR/J	ENSMUSG00220007357	lncRNA gene	Chr2:57231142-57232288 (-)
BALB/cJ	ENSMUSG00180020926	lncRNA gene	Chr2:57085430-57086576 (-)
C3H/HeJ	ENSMUSG00175013760	lncRNA gene	Chr2:57154264-57155410 (-)
C57BL/6NJ	ENSMUSG00215009003	lncRNA gene	Chr2:57138839-57139985 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023135	lncRNA gene	Chr2:56487640-56488782 (-)
CBA/J	ENSMUSG00210034910	lncRNA gene	Chr2:57173381-57174527 (-)
DBA/2J	ENSMUSG00185008371	lncRNA gene	Chr2:57029448-57030594 (-)
FVB/NJ	ENSMUSG00205021624	lncRNA gene	Chr2:56670081-56671227 (-)
JF1/MsJ	ENSUMUG00000022835	lncRNA gene	Chr2:56724211-56725353 (-)
LP/J	ENSMUSG00230001944	lncRNA gene	Chr2:58895813-58896959 (-)
NOD/ShiLtJ	ENSMUSG00190044190	lncRNA gene	Chr2:57118701-57119847 (-)
NZO/HlLtJ	ENSMUSG00225001229	lncRNA gene	Chr2:66618084-66619230 (-)
PWK/PhJ	ENSLUMG00010005605	lncRNA gene	Chr2:56887372-56888512 (-)
SPRET/EiJ	ENSMSPG00010012034	lncRNA gene	Chr2:58053871-58054998 (-)
WSB/EiJ	ENSIUOG00005028414	lncRNA gene	Chr2:57157903-57159049 (-)

Homology

• Gene Tree
  Gm57470
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121263 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121263	Ensembl Gene Model | MGI Sequence Detail	1147	C57BL/6J
transcript	ENSMUST00000247652	Ensembl | MGI Sequence Detail	1147	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57470:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24179	Chr2:59944123-59944151 (-)	-4 bp