Gm57469 Gene Detail

Summary

• Symbol
  Gm57469
• Name
  predicted gene, 57469

• Feature Type
  lncRNA gene
• IDs
  MGI:7338851
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:118136966-118138165 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338851	lncRNA gene	Chr2:118136966-118138165 (-)
129S1/SvImJ	ENSMUSG00200049396	lncRNA gene	Chr2:115071233-115072417 (-)
A/J	ENSMUSG00195025920	lncRNA gene	Chr2:115119512-115120696 (-)
AKR/J	ENSMUSG00220044048	lncRNA gene	Chr2:114997837-114999021 (-)
BALB/cJ	ENSMUSG00180044641	lncRNA gene	Chr2:114924605-114925789 (-)
C3H/HeJ	ENSMUSG00175028340	lncRNA gene	Chr2:115389054-115390238 (-)
C57BL/6NJ	ENSMUSG00215032339	lncRNA gene	Chr2:115052160-115053355 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017302	lncRNA gene	Chr2:114325207-114326386 (-)
CBA/J	ENSMUSG00210007594	lncRNA gene	Chr2:115230064-115231248 (-)
DBA/2J	ENSMUSG00185048596	lncRNA gene	Chr2:114921335-114922519 (-)
FVB/NJ	ENSMUSG00205042192	lncRNA gene	Chr2:114136168-114137352 (-)
JF1/MsJ	ENSUMUG00000040710	lncRNA gene	Chr2:114790495-114791690 (-)
LP/J	ENSMUSG00230024192	lncRNA gene	Chr2:116730977-116732165 (-)
NOD/ShiLtJ	ENSMUSG00190046487	lncRNA gene	Chr2:115158143-115159327 (-)
NZO/HlLtJ	ENSMUSG00225004881	lncRNA gene	Chr2:124636718-124637906 (-)
PWK/PhJ	ENSLUMG00010048888	lncRNA gene	Chr2:114696149-114697350 (-)
SPRET/EiJ	ENSMSPG00010044374	lncRNA gene	Chr2:117099561-117100807 (-)
WSB/EiJ	ENSIUOG00005028903	lncRNA gene	Chr2:114889812-114890996 (-)

Homology

• Gene Tree
  Gm57469
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121262 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121262	Ensembl Gene Model | MGI Sequence Detail	1200	C57BL/6J
transcript	ENSMUST00000247645	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57469:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25770	Chr2:118138157-118138165 (-)	4 bp