Gm57464 Gene Detail

Summary

• Symbol
  Gm57464
• Name
  predicted gene, 57464

• Feature Type
  lncRNA gene
• IDs
  MGI:7338841
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:112198379-112199857 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338841	lncRNA gene	Chr2:112198379-112199857 (+)
129S1/SvImJ	ENSMUSG00200008078	lncRNA gene	Chr2:109088812-109090237 (+)
A/J	ENSMUSG00195030598	lncRNA gene	Chr2:109163301-109164726 (+)
AKR/J	ENSMUSG00220005053	lncRNA gene	Chr2:109028864-109030289 (+)
BALB/cJ	ENSMUSG00180034645	lncRNA gene	Chr2:108958375-108959800 (+)
C3H/HeJ	ENSMUSG00175033158	lncRNA gene	Chr2:109383093-109384519 (+)
C57BL/6NJ	ENSMUSG00215028628	lncRNA gene	Chr2:109097949-109099374 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005846	lncRNA gene	Chr2:108322398-108323823 (+)
CBA/J	ENSMUSG00210039836	lncRNA gene	Chr2:109232431-109233856 (+)
DBA/2J	ENSMUSG00185039782	lncRNA gene	Chr2:108954827-108956252 (+)
FVB/NJ	ENSMUSG00205019107	lncRNA gene	Chr2:108170976-108172401 (+)
JF1/MsJ	ENSUMUG00000003962	lncRNA gene	Chr2:108775185-108776611 (+)
LP/J	ENSMUSG00230006148	lncRNA gene	Chr2:110750940-110752365 (+)
NOD/ShiLtJ	ENSMUSG00190015768	lncRNA gene	Chr2:109173837-109175262 (+)
NZO/HlLtJ	ENSMUSG00225013135	lncRNA gene	Chr2:118651074-118652499 (+)
PWK/PhJ	ENSLUMG00010003331	lncRNA gene	Chr2:108683908-108685334 (+)
SPRET/EiJ	ENSMSPG00010038642	lncRNA gene	Chr2:110972062-110973485 (+)
WSB/EiJ	ENSIUOG00005033368	lncRNA gene	Chr2:108866031-108867457 (+)

Homology

• Gene Tree
  Gm57464
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121215 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121215	Ensembl Gene Model | MGI Sequence Detail	1479	C57BL/6J
transcript	ENSMUST00000247483	Ensembl | MGI Sequence Detail	1479	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57464:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19371	Chr2:112198391-112198423 (+)	28 bp
Tssr19372	Chr2:112198428-112198455 (+)	63 bp