Gm57462 Gene Detail

Summary

• Symbol
  Gm57462
• Name
  predicted gene, 57462

• Feature Type
  lncRNA gene
• IDs
  MGI:7338837
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68693626-68695207 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338837	lncRNA gene	Chr2:68693626-68695207 (+)
129S1/SvImJ	ENSMUSG00200037048	lncRNA gene	Chr2:65746030-65747614 (+)
A/J	ENSMUSG00195023528	lncRNA gene	Chr2:65891140-65892708 (+)
AKR/J	ENSMUSG00220041045	lncRNA gene	Chr2:65858259-65859827 (+)
BALB/cJ	ENSMUSG00180042727	lncRNA gene	Chr2:65849975-65851556 (+)
C3H/HeJ	ENSMUSG00175037915	lncRNA gene	Chr2:65958274-65959855 (+)
C57BL/6NJ	ENSMUSG00215032540	lncRNA gene	Chr2:65789280-65790861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009403	lncRNA gene	Chr2:65250541-65252148 (+)
CBA/J	ENSMUSG00210038968	lncRNA gene	Chr2:65998553-66000134 (+)
DBA/2J	ENSMUSG00185041248	lncRNA gene	Chr2:65845215-65846796 (+)
FVB/NJ	ENSMUSG00205039700	lncRNA gene	Chr2:65306096-65307664 (+)
JF1/MsJ	ENSUMUG00000007457	lncRNA gene	Chr2:65507860-65509443 (+)
LP/J	ENSMUSG00230023043	lncRNA gene	Chr2:67650773-67652354 (+)
NOD/ShiLtJ	ENSMUSG00190042523	lncRNA gene	Chr2:65928449-65930029 (+)
NZO/HlLtJ	ENSMUSG00225015399	lncRNA gene	Chr2:75387415-75388983 (+)
PWK/PhJ	ENSLUMG00010035136	lncRNA gene	Chr2:65722393-65723876 (+)
SPRET/EiJ	ENSMSPG00010037581	lncRNA gene	Chr2:67081245-67082841 (+)
WSB/EiJ	ENSIUOG00005019742	lncRNA gene	Chr2:65976686-65978269 (+)

Homology

• Gene Tree
  Gm57462
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121250 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121250	Ensembl Gene Model | MGI Sequence Detail	1582	C57BL/6J
transcript	ENSMUST00000247602	Ensembl | MGI Sequence Detail	1582	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57462:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18037	Chr2:68693633-68693653 (+)	17 bp