Gm57461 Gene Detail

Summary

• Symbol
  Gm57461
• Name
  predicted gene, 57461

• Feature Type
  lncRNA gene
• IDs
  MGI:7338835
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:91888620-91925431 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1057 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338835	lncRNA gene	Chr2:91888620-91925431 (+)
129S1/SvImJ	ENSMUSG00200054064	lncRNA gene	Chr2:88804842-88805477 (+)
A/J	ENSMUSG00195053863	lncRNA gene	Chr2:88940646-88941281 (+)
AKR/J	ENSMUSG00220052858	lncRNA gene	Chr2:88734766-88735401 (+)
BALB/cJ	ENSMUSG00180054941	lncRNA gene	Chr2:88839584-88840219 (+)
C3H/HeJ	ENSMUSG00175054297	lncRNA gene	Chr2:89100747-89101382 (+)
C57BL/6NJ	ENSMUSG00215053899	lncRNA gene	Chr2:88932074-88932709 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052609	lncRNA gene	Chr2:88338771-88339406 (+)
CBA/J	ENSMUSG00210041943	lncRNA gene	Chr2:89111821-89112456 (+)
DBA/2J	ENSMUSG00185057186	lncRNA gene	Chr2:88835956-88836591 (+)
FVB/NJ	ENSMUSG00205052648	lncRNA gene	Chr2:88122510-88123145 (+)
JF1/MsJ	ENSUMUG00000034321	lncRNA gene	Chr2:88655632-88656267 (+)
LP/J	ENSMUSG00230046115	lncRNA gene	Chr2:90586513-90587148 (+)
NOD/ShiLtJ	ENSMUSG00190051322	lncRNA gene	Chr2:88914638-88915273 (+)
NZO/HlLtJ	ENSMUSG00225053870	lncRNA gene	Chr2:98505225-98505860 (+)
PWK/PhJ	ENSLUMG00010052429	lncRNA gene	Chr2:88633058-88633693 (+)
SPRET/EiJ	ENSMSPG00010052119	lncRNA gene	Chr2:90589335-90589970 (+)
WSB/EiJ	ENSIUOG00005053476	lncRNA gene	Chr2:88640654-88641289 (+)

Homology

• Gene Tree
  Gm57461
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121001 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121001	Ensembl Gene Model | MGI Sequence Detail	36812	C57BL/6J
transcript	ENSMUST00000274532	Ensembl | MGI Sequence Detail	2186	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57461:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18931	Chr2:91889054-91889074 (+)	444 bp
Tssr18932	Chr2:91889075-91889123 (+)	479 bp