Gm57459 Gene Detail

Summary

• Symbol
  Gm57459
• Name
  predicted gene, 57459

• Feature Type
  lncRNA gene
• IDs
  MGI:7338831
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:164365574-164366392 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338831	lncRNA gene	Chr2:164365574-164366392 (+)
129S1/SvImJ	ENSMUSG00200017674	lncRNA gene	Chr2:161252938-161253736 (+)
A/J	ENSMUSG00195022712	lncRNA gene	Chr2:161585741-161586538 (+)
AKR/J	ENSMUSG00220014344	lncRNA gene	Chr2:160915404-160916197 (+)
BALB/cJ	ENSMUSG00180049216	lncRNA gene	Chr2:161039486-161040283 (+)
C3H/HeJ	ENSMUSG00175051422	lncRNA gene	Chr2:161785856-161786653 (+)
C57BL/6NJ	ENSMUSG00215037411	lncRNA gene	Chr2:161237499-161238292 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047522	lncRNA gene	Chr2:160156525-160157322 (+)
CBA/J	ENSMUSG00210017187	lncRNA gene	Chr2:161720134-161720931 (+)
DBA/2J	ENSMUSG00185049913	lncRNA gene	Chr2:161453051-161453848 (+)
FVB/NJ	ENSMUSG00205044841	lncRNA gene	Chr2:160473904-160474701 (+)
JF1/MsJ	ENSUMUG00000033796	lncRNA gene	Chr2:161096802-161097599 (+)
LP/J	ENSMUSG00230046267	lncRNA gene	Chr2:163014040-163014838 (+)
NOD/ShiLtJ	ENSMUSG00190047075	lncRNA gene	Chr2:161124967-161125764 (+)
NZO/HlLtJ	ENSMUSG00225053617	lncRNA gene	Chr2:171015372-171016169 (+)
PWK/PhJ	ENSLUMG00010048171	lncRNA gene	Chr2:161000141-161000938 (+)
SPRET/EiJ	ENSMSPG00010029065	lncRNA gene	Chr2:163762076-163763143 (+)
WSB/EiJ	ENSIUOG00005047312	lncRNA gene	Chr2:160846084-160846877 (+)

Homology

• Gene Tree
  Gm57459
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121248 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121248	Ensembl Gene Model | MGI Sequence Detail	819	C57BL/6J
transcript	ENSMUST00000247593	Ensembl | MGI Sequence Detail	819	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57459:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21611	Chr2:164365583-164365604 (+)	20 bp
Tssr756	Chr2:164365610-164365628 (+)	45 bp