Gm57456 Gene Detail

Summary

• Symbol
  Gm57456
• Name
  predicted gene, 57456

• Feature Type
  lncRNA gene
• IDs
  MGI:7338825
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:30950464-30950630 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338825	lncRNA gene	Chr2:30950464-30950630 (+)
129S1/SvImJ	ENSMUSG00200053624	lncRNA gene	Chr2:27921528-27921693 (+)
A/J	ENSMUSG00195050638	lncRNA gene	Chr2:28016037-28016202 (+)
AKR/J	ENSMUSG00220053932	lncRNA gene	Chr2:28133991-28134156 (+)
BALB/cJ	ENSMUSG00180054373	lncRNA gene	Chr2:28034558-28034723 (+)
C3H/HeJ	ENSMUSG00175053950	lncRNA gene	Chr2:28003746-28003911 (+)
C57BL/6NJ	ENSMUSG00215049761	lncRNA gene	Chr2:28069440-28069605 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053553	lncRNA gene	Chr2:27748429-27748594 (+)
CBA/J	ENSMUSG00210017758	lncRNA gene	Chr2:28076651-28076816 (+)
DBA/2J	ENSMUSG00185053837	lncRNA gene	Chr2:27929415-27929580 (+)
FVB/NJ	ENSMUSG00205051370	lncRNA gene	Chr2:27781536-27781701 (+)
JF1/MsJ	ENSUMUG00000056759	lncRNA gene	Chr2:27828784-27828949 (+)
LP/J	ENSMUSG00230046103	lncRNA gene	Chr2:29857162-29857327 (+)
NOD/ShiLtJ	ENSMUSG00190053120	lncRNA gene	Chr2:28036131-28036296 (+)
NZO/HlLtJ	ENSMUSG00225010820	lncRNA gene	Chr2:37607585-37607750 (+)
PWK/PhJ	ENSLUMG00010052744	lncRNA gene	Chr2:27913795-27913960 (+)
SPRET/EiJ	ENSMSPG00010047734	lncRNA gene	Chr2:28629916-28630081 (+)
WSB/EiJ	ENSIUOG00005053095	lncRNA gene	Chr2:27887211-27887376 (+)

Homology

• Gene Tree
  Gm57456
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121206 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121206	Ensembl Gene Model | MGI Sequence Detail	167	C57BL/6J
transcript	ENSMUST00000247452	Ensembl | MGI Sequence Detail	167	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57456:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17166	Chr2:30950470-30950485 (+)	14 bp