Gm57454 Gene Detail

Summary

• Symbol
  Gm57454
• Name
  predicted gene, 57454

• Feature Type
  lncRNA gene
• IDs
  MGI:7338821
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:71178306-71179761 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338821	lncRNA gene	Chr2:71178306-71179761 (+)
129S1/SvImJ	ENSMUSG00200036964	lncRNA gene	Chr2:68237725-68239186 (+)
A/J	ENSMUSG00195022772	lncRNA gene	Chr2:68381211-68382663 (+)
AKR/J	ENSMUSG00220039960	lncRNA gene	Chr2:68345944-68347396 (+)
BALB/cJ	ENSMUSG00180042991	lncRNA gene	Chr2:68337252-68338707 (+)
C3H/HeJ	ENSMUSG00175039338	lncRNA gene	Chr2:68448586-68450038 (+)
C57BL/6NJ	ENSMUSG00215033328	lncRNA gene	Chr2:68275501-68276956 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009608	lncRNA gene	Chr2:67757127-67758578 (+)
CBA/J	ENSMUSG00210039610	lncRNA gene	Chr2:68496479-68497934 (+)
DBA/2J	ENSMUSG00185041234	lncRNA gene	Chr2:68332132-68333587 (+)
FVB/NJ	ENSMUSG00205039458	lncRNA gene	Chr2:67791616-67793068 (+)
JF1/MsJ	ENSUMUG00000006716	lncRNA gene	Chr2:67990638-67992090 (+)
LP/J	ENSMUSG00230022771	lncRNA gene	Chr2:70137447-70138902 (+)
NOD/ShiLtJ	ENSMUSG00190039097	lncRNA gene	Chr2:68414292-68415744 (+)
NZO/HlLtJ	ENSMUSG00225015267	lncRNA gene	Chr2:77879743-77881198 (+)
PWK/PhJ	ENSLUMG00010034634	lncRNA gene	Chr2:68221759-68223210 (+)
SPRET/EiJ	ENSMSPG00010036543	lncRNA gene	Chr2:69616136-69617588 (+)
WSB/EiJ	ENSIUOG00005020400	lncRNA gene	Chr2:68461094-68462557 (+)

Homology

• Gene Tree
  Gm57454
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121199 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121199	Ensembl Gene Model | MGI Sequence Detail	1456	C57BL/6J
transcript	ENSMUST00000247431	Ensembl | MGI Sequence Detail	1456	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57454:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18255	Chr2:71178299-71178318 (+)	3 bp
Tssr18256	Chr2:71178851-71178888 (+)	564 bp