Gm57452 Gene Detail

Summary

• Symbol
  Gm57452
• Name
  predicted gene, 57452

• Feature Type
  lncRNA gene
• IDs
  MGI:7338817
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:22662693-22664455 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338817	lncRNA gene	Chr2:22662693-22664455 (-)
129S1/SvImJ	ENSMUSG00200042236	lncRNA gene	Chr2:19641662-19642192 (-)
A/J	ENSMUSG00195019434	lncRNA gene	Chr2:19736785-19737315 (-)
AKR/J	ENSMUSG00220013891	lncRNA gene	Chr2:19857928-19858458 (-)
BALB/cJ	ENSMUSG00180039712	lncRNA gene	Chr2:19742780-19743310 (-)
C3H/HeJ	ENSMUSG00175023663	lncRNA gene	Chr2:19707419-19707949 (-)
C57BL/6NJ	ENSMUSG00215034598	lncRNA gene	Chr2:19767182-19767712 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004504	lncRNA gene	Chr2:19467617-19468146 (-)
CBA/J	ENSMUSG00210004087	lncRNA gene	Chr2:19746409-19746939 (-)
DBA/2J	ENSMUSG00185039942	lncRNA gene	Chr2:19651166-19651696 (-)
FVB/NJ	ENSMUSG00205015267	lncRNA gene	Chr2:19671684-19672214 (-)
JF1/MsJ	ENSUMUG00000004318	lncRNA gene	Chr2:19530247-19530780 (-)
LP/J	ENSMUSG00230046668	lncRNA gene	Chr2:21577657-21578187 (-)
NOD/ShiLtJ	ENSMUSG00190014625	lncRNA gene	Chr2:19737399-19737929 (-)
NZO/HlLtJ	ENSMUSG00225001776	lncRNA gene	Chr2:29328265-29328795 (-)
PWK/PhJ	ENSLUMG00010032963	lncRNA gene	Chr2:19610878-19611411 (-)
SPRET/EiJ	ENSMSPG00010016081	lncRNA gene	Chr2:20227193-20227711 (-)
WSB/EiJ	ENSIUOG00005015879	lncRNA gene	Chr2:19558102-19558632 (-)

Homology

• Gene Tree
  Gm57452
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120964 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120964	Ensembl Gene Model | MGI Sequence Detail	1763	C57BL/6J
transcript	ENSMUST00000246667	Ensembl | MGI Sequence Detail	1763	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57452:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr424	Chr2:22664304-22664345 (-)	130 bp