Gm57449 Gene Detail

Summary

• Symbol
  Gm57449
• Name
  predicted gene, 57449

• Feature Type
  lncRNA gene
• IDs
  MGI:7338811
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:92992267-92993295 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338811	lncRNA gene	Chr2:92992267-92993295 (-)
129S1/SvImJ	ENSMUSG00200053907	lncRNA gene	Chr2:89909537-89910565 (-)
A/J	ENSMUSG00195053670	lncRNA gene	Chr2:90046368-90047396 (-)
AKR/J	ENSMUSG00220052912	lncRNA gene	Chr2:89844130-89845158 (-)
BALB/cJ	ENSMUSG00180054852	lncRNA gene	Chr2:89944234-89945262 (-)
C3H/HeJ	ENSMUSG00175054316	lncRNA gene	Chr2:90208602-90209630 (-)
C57BL/6NJ	ENSMUSG00215053789	lncRNA gene	Chr2:90036782-90037810 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052936	lncRNA gene	Chr2:89454597-89455625 (-)
CBA/J	ENSMUSG00210041715	lncRNA gene	Chr2:90216690-90217718 (-)
DBA/2J	ENSMUSG00185057288	lncRNA gene	Chr2:89940559-89941587 (-)
FVB/NJ	ENSMUSG00205053224	lncRNA gene	Chr2:89230588-89231616 (-)
JF1/MsJ	ENSUMUG00000033705	lncRNA gene	Chr2:89763998-89765026 (-)
LP/J	ENSMUSG00230045970	lncRNA gene	Chr2:91691052-91692080 (-)
NOD/ShiLtJ	ENSMUSG00190051912	lncRNA gene	Chr2:90019216-90020244 (-)
NZO/HlLtJ	ENSMUSG00225053814	lncRNA gene	Chr2:99605089-99606117 (-)
PWK/PhJ	ENSLUMG00010052609	lncRNA gene	Chr2:89739519-89740547 (-)
SPRET/EiJ	ENSMSPG00010008959	lncRNA gene	Chr2:91706437-91707466 (-)
WSB/EiJ	ENSIUOG00005053491	lncRNA gene	Chr2:89745606-89746634 (-)

Homology

• Gene Tree
  Gm57449
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121187 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121187	Ensembl Gene Model | MGI Sequence Detail	1029	C57BL/6J
transcript	ENSMUST00000247410	Ensembl | MGI Sequence Detail	1029	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57449:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25279	Chr2:92993280-92993296 (-)	7 bp