Gm57448 Gene Detail

Summary

• Symbol
  Gm57448
• Name
  predicted gene, 57448

• Feature Type
  lncRNA gene
• IDs
  MGI:7338809
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:35351371-35351806 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338809	lncRNA gene	Chr2:35351371-35351806 (+)
129S1/SvImJ	ENSMUSG00200048431	lncRNA gene	Chr2:32336913-32337115 (+)
A/J	ENSMUSG00195041109	lncRNA gene	Chr2:32438944-32439146 (+)
AKR/J	ENSMUSG00220044777	lncRNA gene	Chr2:32553878-32554081 (+)
BALB/cJ	ENSMUSG00180049332	lncRNA gene	Chr2:32453324-32453526 (+)
C3H/HeJ	ENSMUSG00175046301	lncRNA gene	Chr2:32419646-32419848 (+)
C57BL/6NJ	ENSMUSG00215047679	lncRNA gene	Chr2:32486814-32487016 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018015	lncRNA gene	Chr2:32152768-32152970 (+)
CBA/J	ENSMUSG00210049788	lncRNA gene	Chr2:32491960-32492162 (+)
DBA/2J	ENSMUSG00185049387	lncRNA gene	Chr2:32351807-32352009 (+)
FVB/NJ	ENSMUSG00205040637	lncRNA gene	Chr2:32198136-32198339 (+)
JF1/MsJ	ENSUMUG00000014593	lncRNA gene	Chr2:32243463-32243666 (+)
LP/J	ENSMUSG00230046526	lncRNA gene	Chr2:34272252-34272454 (+)
NOD/ShiLtJ	ENSMUSG00190043435	lncRNA gene	Chr2:32453124-32453326 (+)
NZO/HlLtJ	ENSMUSG00225049970	lncRNA gene	Chr2:42035566-42035767 (+)
PWK/PhJ	ENSLUMG00010044106	lncRNA gene	Chr2:32337547-32337751 (+)
SPRET/EiJ	ENSMSPG00010042908	lncRNA gene	Chr2:33051343-33051543 (+)
WSB/EiJ	ENSIUOG00005043650	lncRNA gene	Chr2:32325979-32326181 (+)

Homology

• Gene Tree
  Gm57448
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121175 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121175	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000247385	Ensembl | MGI Sequence Detail	436	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57448:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17472	Chr2:35351514-35351528 (+)	150 bp