Gm57442 Gene Detail

Summary

• Symbol
  Gm57442
• Name
  predicted gene, 57442

• Feature Type
  lncRNA gene
• IDs
  MGI:7338797
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:46250072-46250460 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338797	lncRNA gene	Chr2:46250072-46250460 (-)
129S1/SvImJ	ENSMUSG00200011616	lncRNA gene	Chr2:43273316-43273701 (-)
A/J	ENSMUSG00195010546	lncRNA gene	Chr2:43366064-43366449 (-)
AKR/J	ENSMUSG00220021250	lncRNA gene	Chr2:43528491-43528876 (-)
BALB/cJ	ENSMUSG00180023048	lncRNA gene	Chr2:43366442-43366827 (-)
C3H/HeJ	ENSMUSG00175014557	lncRNA gene	Chr2:43360145-43360530 (-)
C57BL/6NJ	ENSMUSG00215017074	lncRNA gene	Chr2:43406150-43406535 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001739	lncRNA gene	Chr2:43007306-43007691 (-)
CBA/J	ENSMUSG00210001202	lncRNA gene	Chr2:43414075-43414460 (-)
DBA/2J	ENSMUSG00185002775	lncRNA gene	Chr2:43274262-43274647 (-)
FVB/NJ	ENSMUSG00205001883	lncRNA gene	Chr2:43077857-43078242 (-)
JF1/MsJ	ENSUMUG00000000768	lncRNA gene	Chr2:43098020-43098405 (-)
LP/J	ENSMUSG00230000788	lncRNA gene	Chr2:45188222-45188607 (-)
NOD/ShiLtJ	ENSMUSG00190002230	lncRNA gene	Chr2:43252764-43253149 (-)
NZO/HlLtJ	ENSMUSG00225000799	lncRNA gene	Chr2:52905395-52905780 (-)
PWK/PhJ	ENSLUMG00010004609	lncRNA gene	Chr2:43245921-43246306 (-)
SPRET/EiJ	ENSMSPG00010011276	lncRNA gene	Chr2:44188215-44188600 (-)
WSB/EiJ	ENSIUOG00005001286	lncRNA gene	Chr2:43282187-43282572 (-)

Homology

• Gene Tree
  Gm57442
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121074 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121074	Ensembl Gene Model | MGI Sequence Detail	389	C57BL/6J
transcript	ENSMUST00000247077	Ensembl | MGI Sequence Detail	389	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23996	Chr2:46250453-46250454 (-)	6 bp