Gm57440 Gene Detail

Summary

• Symbol
  Gm57440
• Name
  predicted gene, 57440

• Feature Type
  lncRNA gene
• IDs
  MGI:7338793
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:166555687-166556902 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338793	lncRNA gene	Chr2:166555687-166556902 (+)
129S1/SvImJ	ENSMUSG00200041114	lncRNA gene	Chr2:163437340-163437812 (+)
A/J	ENSMUSG00195025319	lncRNA gene	Chr2:163782717-163783189 (+)
AKR/J	ENSMUSG00220036843	lncRNA gene	Chr2:163101996-163102468 (+)
BALB/cJ	ENSMUSG00180038445	lncRNA gene	Chr2:163236365-163236837 (+)
C3H/HeJ	ENSMUSG00175045375	lncRNA gene	Chr2:163981387-163981859 (+)
C57BL/6NJ	ENSMUSG00215036222	lncRNA gene	Chr2:163431129-163431601 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009214	lncRNA gene	Chr2:162331044-162331516 (+)
CBA/J	ENSMUSG00210044772	lncRNA gene	Chr2:163916759-163917231 (+)
DBA/2J	ENSMUSG00185026914	lncRNA gene	Chr2:163642503-163642975 (+)
FVB/NJ	ENSMUSG00205031870	lncRNA gene	Chr2:162663354-162663826 (+)
JF1/MsJ	ENSUMUG00000047793	lncRNA gene	Chr2:163280224-163280695 (+)
LP/J	ENSMUSG00230013859	lncRNA gene	Chr2:165198246-165198718 (+)
NOD/ShiLtJ	ENSMUSG00190042460	lncRNA gene	Chr2:163321714-163322186 (+)
NZO/HlLtJ	ENSMUSG00225003526	lncRNA gene	Chr2:173209303-173209775 (+)
PWK/PhJ	ENSLUMG00010048685	lncRNA gene	Chr2:163189146-163189617 (+)
SPRET/EiJ	ENSMSPG00010030287	lncRNA gene	Chr2:165945460-165945932 (+)
WSB/EiJ	ENSIUOG00005027104	lncRNA gene	Chr2:163031970-163032442 (+)

Homology

• Gene Tree
  Gm57440
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120902 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120902	Ensembl Gene Model | MGI Sequence Detail	1216	C57BL/6J
transcript	ENSMUST00000246381	Ensembl | MGI Sequence Detail	1216	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57440:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21773	Chr2:166556021-166556036 (+)	342 bp