Gm57438 Gene Detail

Summary

• Symbol
  Gm57438
• Name
  predicted gene, 57438

• Feature Type
  lncRNA gene
• IDs
  MGI:7338789
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:20973770-20974436 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338789	lncRNA gene	Chr2:20973770-20974436 (-)
129S1/SvImJ	ENSMUSG00200042138	lncRNA gene	Chr2:17926726-17927289 (-)
A/J	ENSMUSG00195019068	lncRNA gene	Chr2:18066598-18067161 (-)
AKR/J	ENSMUSG00220014102	lncRNA gene	Chr2:18187596-18188159 (-)
BALB/cJ	ENSMUSG00180037681	lncRNA gene	Chr2:18050548-18051111 (-)
C3H/HeJ	ENSMUSG00175022837	lncRNA gene	Chr2:18015877-18016440 (-)
C57BL/6NJ	ENSMUSG00215033986	lncRNA gene	Chr2:18100841-18101404 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004530	lncRNA gene	Chr2:17840982-17841545 (-)
CBA/J	ENSMUSG00210004121	lncRNA gene	Chr2:18053922-18054485 (-)
DBA/2J	ENSMUSG00185039390	lncRNA gene	Chr2:17981093-17981656 (-)
FVB/NJ	ENSMUSG00205014992	lncRNA gene	Chr2:17990315-17990878 (-)
JF1/MsJ	ENSUMUG00000004792	lncRNA gene	Chr2:17899349-17899912 (-)
LP/J	ENSMUSG00230020524	lncRNA gene	Chr2:19886251-19886814 (-)
NOD/ShiLtJ	ENSMUSG00190014688	lncRNA gene	Chr2:18034103-18034666 (-)
NZO/HlLtJ	ENSMUSG00225001815	lncRNA gene	Chr2:27636788-27637351 (-)
PWK/PhJ	ENSLUMG00010035219	lncRNA gene	Chr2:17996701-17997265 (-)
SPRET/EiJ	ENSMSPG00010015535	lncRNA gene	Chr2:18525233-18525795 (-)
WSB/EiJ	ENSIUOG00005015716	lncRNA gene	Chr2:18088074-18088637 (-)

Homology

• Gene Tree
  Gm57438
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120769 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120769	Ensembl Gene Model | MGI Sequence Detail	667	C57BL/6J
transcript	ENSMUST00000245716	Ensembl | MGI Sequence Detail	667	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57438:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22847	Chr2:20974382-20974397 (-)	46 bp
Tssr22846	Chr2:20974063-20974093 (-)	358 bp