Gm57434 Gene Detail

Summary

• Symbol
  Gm57434
• Name
  predicted gene, 57434

• Feature Type
  lncRNA gene
• IDs
  MGI:7338781
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:160204339-160209964 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338781	lncRNA gene	Chr2:160204339-160209964 (-)
129S1/SvImJ	ENSMUSG00200017804	lncRNA gene	Chr2:157051572-157052362 (-)
A/J	ENSMUSG00195022950	lncRNA gene	Chr2:157437233-157438024 (-)
AKR/J	ENSMUSG00220013908	lncRNA gene	Chr2:156776503-156777295 (-)
BALB/cJ	ENSMUSG00180049968	lncRNA gene	Chr2:156891140-156891933 (-)
C3H/HeJ	ENSMUSG00175051536	lncRNA gene	Chr2:157641111-157641902 (-)
C57BL/6NJ	ENSMUSG00215038992	lncRNA gene	Chr2:157076078-157076870 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047604	lncRNA gene	Chr2:156009897-156010691 (-)
CBA/J	ENSMUSG00210017310	lncRNA gene	Chr2:157572236-157573027 (-)
DBA/2J	ENSMUSG00185049548	lncRNA gene	Chr2:157302648-157303440 (-)
FVB/NJ	ENSMUSG00205045741	lncRNA gene	Chr2:156350409-156351200 (-)
JF1/MsJ	ENSUMUG00000039239	lncRNA gene	Chr2:156956236-156957029 (-)
LP/J	ENSMUSG00230046854	lncRNA gene	Chr2:158848973-158849763 (-)
NOD/ShiLtJ	ENSMUSG00190046177	lncRNA gene	Chr2:156930943-156931734 (-)
NZO/HlLtJ	ENSMUSG00225054265	lncRNA gene	Chr2:166884745-166885537 (-)
PWK/PhJ	ENSLUMG00010047836	lncRNA gene	Chr2:156879706-156880499 (-)
SPRET/EiJ	ENSMSPG00010035740	lncRNA gene	Chr2:159627500-159628294 (-)
WSB/EiJ	ENSIUOG00005046261	lncRNA gene	Chr2:156728649-156729440 (-)

Homology

• Gene Tree
  Gm57434
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120859 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120859	Ensembl Gene Model | MGI Sequence Detail	5626	C57BL/6J
transcript	ENSMUST00000280675	Ensembl | MGI Sequence Detail	1218	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57434:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27241	Chr2:160209860-160209871 (-)	98 bp