Gm57430 Gene Detail

Summary

• Symbol
  Gm57430
• Name
  predicted gene, 57430

• Feature Type
  lncRNA gene
• IDs
  MGI:7338773
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:30483524-30484982 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338773	lncRNA gene	Chr2:30483524-30484982 (-)
129S1/SvImJ	ENSMUSG00200053162	lncRNA gene	Chr2:27454748-27455868 (-)
A/J	ENSMUSG00195050459	lncRNA gene	Chr2:27548662-27549782 (-)
AKR/J	ENSMUSG00220053956	lncRNA gene	Chr2:27667219-27668339 (-)
BALB/cJ	ENSMUSG00180054379	lncRNA gene	Chr2:27567718-27568838 (-)
C3H/HeJ	ENSMUSG00175054017	lncRNA gene	Chr2:27536976-27538096 (-)
C57BL/6NJ	ENSMUSG00215049593	lncRNA gene	Chr2:27602661-27603781 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053475	lncRNA gene	Chr2:27271800-27272921 (-)
CBA/J	ENSMUSG00210017893	lncRNA gene	Chr2:27609886-27611006 (-)
DBA/2J	ENSMUSG00185053216	lncRNA gene	Chr2:27462696-27463816 (-)
FVB/NJ	ENSMUSG00205051670	lncRNA gene	Chr2:27314782-27315902 (-)
JF1/MsJ	ENSUMUG00000056379	lncRNA gene	Chr2:27359418-27360551 (-)
LP/J	ENSMUSG00230045343	lncRNA gene	Chr2:29390425-29391545 (-)
NOD/ShiLtJ	ENSMUSG00190053639	lncRNA gene	Chr2:27569407-27570527 (-)
NZO/HlLtJ	ENSMUSG00225010915	lncRNA gene	Chr2:37140497-37141617 (-)
PWK/PhJ	ENSLUMG00010053020	lncRNA gene	Chr2:27436380-27437513 (-)
SPRET/EiJ	ENSMSPG00010047138	lncRNA gene	Chr2:28167747-28168879 (-)
WSB/EiJ	ENSIUOG00005052851	lncRNA gene	Chr2:27415029-27416149 (-)

Homology

• Gene Tree
  Gm57430
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120657 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120657	Ensembl Gene Model | MGI Sequence Detail	1459	C57BL/6J
transcript	ENSMUST00000244947	Ensembl | MGI Sequence Detail	1459	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23385	Chr2:30484913-30484929 (-)	61 bp