Gm57426 Gene Detail

Summary

• Symbol
  Gm57426
• Name
  predicted gene, 57426

• Feature Type
  lncRNA gene
• IDs
  MGI:7338765
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr2:172907703-172916169 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  509 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338765	lncRNA gene	Chr2:172907703-172916169 (+)
129S1/SvImJ	ENSMUSG00200040794	lncRNA gene	Chr2:169847103-169847956 (+)
A/J	ENSMUSG00195025472	lncRNA gene	Chr2:170175520-170176373 (+)
AKR/J	ENSMUSG00220037436	lncRNA gene	Chr2:169471197-169472050 (+)
BALB/cJ	ENSMUSG00180037850	lncRNA gene	Chr2:169612228-169613081 (+)
C3H/HeJ	ENSMUSG00175044543	lncRNA gene	Chr2:170381917-170382770 (+)
C57BL/6NJ	ENSMUSG00215034765	lncRNA gene	Chr2:169810816-169811669 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009110	lncRNA gene	Chr2:168712018-168712870 (+)
CBA/J	ENSMUSG00210045326	lncRNA gene	Chr2:170292179-170293032 (+)
DBA/2J	ENSMUSG00185026150	lncRNA gene	Chr2:170005753-170006606 (+)
FVB/NJ	ENSMUSG00205025949	lncRNA gene	Chr2:169062236-169063089 (+)
JF1/MsJ	ENSUMUG00000048429	lncRNA gene	Chr2:169691281-169692117 (+)
LP/J	ENSMUSG00230012563	lncRNA gene	Chr2:171583484-171584337 (+)
NOD/ShiLtJ	ENSMUSG00190046266	lncRNA gene	Chr2:169692421-169693257 (+)
NZO/HlLtJ	ENSMUSG00225004091	lncRNA gene	Chr2:179568534-179569370 (+)
PWK/PhJ	ENSLUMG00010038252	lncRNA gene	Chr2:169589809-169590645 (+)
SPRET/EiJ	ENSMSPG00010029470	lncRNA gene	Chr2:172344078-172344931 (+)
WSB/EiJ	ENSIUOG00005026841	lncRNA gene	Chr2:169434163-169435016 (+)

Homology

• Gene Tree
  Gm57426
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120642 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120642	Ensembl Gene Model | MGI Sequence Detail	8467	C57BL/6J
transcript	ENSMUST00000344997	Ensembl | MGI Sequence Detail	1296	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57426:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22003	Chr2:172907095-172907100 (+)	-605 bp
Tssr22004	Chr2:172907771-172907773 (+)	69 bp
Tssr22005	Chr2:172914964-172914968 (+)	7,263 bp
Tssr22006	Chr2:172914982-172914995 (+)	7,286 bp
Tssr22007	Chr2:172914999-172915011 (+)	7,302 bp
Tssr22008	Chr2:172915014-172915023 (+)	7,316 bp
Tssr22009	Chr2:172915032-172915047 (+)	7,337 bp
Tssr781	Chr2:172915069-172915076 (+)	7,370 bp
Tssr22010	Chr2:172915080-172915091 (+)	7,383 bp