Gm57425 Gene Detail

Summary

• Symbol
  Gm57425
• Name
  predicted gene, 57425

• Feature Type
  lncRNA gene
• IDs
  MGI:7338763
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:85028578-85029101 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338763	lncRNA gene	Chr2:85028578-85029101 (-)
129S1/SvImJ	ENSMUSG00200054239	lncRNA gene	Chr2:82045397-82045865 (-)
A/J	ENSMUSG00195053677	lncRNA gene	Chr2:82147616-82148084 (-)
AKR/J	ENSMUSG00220052548	lncRNA gene	Chr2:82026348-82026816 (-)
BALB/cJ	ENSMUSG00180054818	lncRNA gene	Chr2:82075411-82075879 (-)
C3H/HeJ	ENSMUSG00175054288	lncRNA gene	Chr2:82214992-82215460 (-)
C57BL/6NJ	ENSMUSG00215053705	lncRNA gene	Chr2:82130473-82130941 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052625	lncRNA gene	Chr2:81571252-81571720 (-)
CBA/J	ENSMUSG00210041760	lncRNA gene	Chr2:82242904-82243372 (-)
DBA/2J	ENSMUSG00185057257	lncRNA gene	Chr2:82071650-82072118 (-)
FVB/NJ	ENSMUSG00205052607	lncRNA gene	Chr2:81457750-81458218 (-)
JF1/MsJ	ENSUMUG00000034465	lncRNA gene	Chr2:81993857-81994325 (-)
LP/J	ENSMUSG00230045362	lncRNA gene	Chr2:83822717-83823185 (-)
NOD/ShiLtJ	ENSMUSG00190051536	lncRNA gene	Chr2:82112377-82112845 (-)
NZO/HlLtJ	ENSMUSG00225003287	lncRNA gene	Chr2:91707471-91707939 (-)
PWK/PhJ	ENSLUMG00010051860	lncRNA gene	Chr2:82012104-82012572 (-)
SPRET/EiJ	ENSMSPG00010052215	lncRNA gene	Chr2:83933294-83933762 (-)
WSB/EiJ	ENSIUOG00005053415	lncRNA gene	Chr2:82056154-82056622 (-)

Homology

• Gene Tree
  Gm57425
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120621 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120621	Ensembl Gene Model | MGI Sequence Detail	524	C57BL/6J
transcript	ENSMUST00000244647	Ensembl | MGI Sequence Detail	524	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57425:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25069	Chr2:85029082-85029124 (-)	-2 bp