Gm57423 Gene Detail

Summary

• Symbol
  Gm57423
• Name
  predicted gene, 57423

• Feature Type
  lncRNA gene
• IDs
  MGI:7338759
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:84574233-84574932 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338759	lncRNA gene	Chr2:84574233-84574932 (+)
129S1/SvImJ	ENSMUSG00200054016	lncRNA gene	Chr2:81590656-81591357 (+)
A/J	ENSMUSG00195053375	lncRNA gene	Chr2:81703610-81704309 (+)
AKR/J	ENSMUSG00220052504	lncRNA gene	Chr2:81582288-81582987 (+)
BALB/cJ	ENSMUSG00180054834	lncRNA gene	Chr2:81631451-81632150 (+)
C3H/HeJ	ENSMUSG00175054269	lncRNA gene	Chr2:81771045-81771742 (+)
C57BL/6NJ	ENSMUSG00215053632	lncRNA gene	Chr2:81675755-81676454 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052660	lncRNA gene	Chr2:81121665-81122364 (+)
CBA/J	ENSMUSG00210043888	lncRNA gene	Chr2:81798944-81799643 (+)
DBA/2J	ENSMUSG00185057117	lncRNA gene	Chr2:81627690-81628389 (+)
FVB/NJ	ENSMUSG00205052851	lncRNA gene	Chr2:81009258-81009963 (+)
JF1/MsJ	ENSUMUG00000037822	lncRNA gene	Chr2:81553379-81554074 (+)
LP/J	ENSMUSG00230045306	lncRNA gene	Chr2:83378791-83379490 (+)
NOD/ShiLtJ	ENSMUSG00190050896	lncRNA gene	Chr2:81668146-81668845 (+)
NZO/HlLtJ	ENSMUSG00225003271	lncRNA gene	Chr2:91263288-91263987 (+)
PWK/PhJ	ENSLUMG00010052729	lncRNA gene	Chr2:81568625-81569364 (+)
SPRET/EiJ	ENSMSPG00010052172	lncRNA gene	Chr2:83465847-83466566 (+)
WSB/EiJ	ENSIUOG00005053440	lncRNA gene	Chr2:81608002-81608725 (+)

Homology

• Gene Tree
  Gm57423
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120560 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120560	Ensembl Gene Model | MGI Sequence Detail	700	C57BL/6J
transcript	ENSMUST00000244175	Ensembl | MGI Sequence Detail	700	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57423:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18679	Chr2:84573265-84573283 (+)	-959 bp
Tssr18680	Chr2:84573342-84573356 (+)	-884 bp
Tssr18681	Chr2:84574224-84574253 (+)	6 bp