Gm57422 Gene Detail

Summary

• Symbol
  Gm57422
• Name
  predicted gene, 57422

• Feature Type
  lncRNA gene
• IDs
  MGI:7338757
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:131194828-131242082 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1019 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338757	lncRNA gene	Chr2:131194828-131242082 (+)
129S1/SvImJ	ENSMUSG00200049001	lncRNA gene	Chr2:128237771-128239449 (+)
A/J	ENSMUSG00195031494	lncRNA gene	Chr2:128271021-128272704 (+)
AKR/J	ENSMUSG00220045758	lncRNA gene	Chr2:128031395-128033076 (+)
BALB/cJ	ENSMUSG00180049073	lncRNA gene	Chr2:128089553-128091236 (+)
C3H/HeJ	ENSMUSG00175048571	lncRNA gene	Chr2:128620489-128622178 (+)
C57BL/6NJ	ENSMUSG00215036396	lncRNA gene	Chr2:128119065-128120750 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040705	lncRNA gene	Chr2:127397646-127399324 (+)
CBA/J	ENSMUSG00210035087	lncRNA gene	Chr2:128477146-128478833 (+)
DBA/2J	ENSMUSG00185037112	lncRNA gene	Chr2:128124402-128126079 (+)
FVB/NJ	ENSMUSG00205041931	lncRNA gene	Chr2:127292319-127294007 (+)
JF1/MsJ	ENSUMUG00000028818	lncRNA gene	Chr2:127944973-127946664 (+)
LP/J	ENSMUSG00230039201	lncRNA gene	Chr2:129872936-129874614 (+)
NOD/ShiLtJ	ENSMUSG00190015927	lncRNA gene	Chr2:128230329-128232013 (+)
NZO/HlLtJ	ENSMUSG00225027695	lncRNA gene	Chr2:137781766-137783445 (+)
PWK/PhJ	ENSLUMG00010044215	lncRNA gene	Chr2:127919910-127921605 (+)
SPRET/EiJ	ENSMSPG00010032875	lncRNA gene	Chr2:130293089-130294743 (+)
WSB/EiJ	ENSIUOG00005044805	lncRNA gene	Chr2:128051048-128052721 (+)

Homology

• Gene Tree
  Gm57422
  

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000120540 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120540	Ensembl Gene Model | MGI Sequence Detail	47255	C57BL/6J
transcript	ENSMUST00000244081	Ensembl | MGI Sequence Detail	1786	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57422:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20263	Chr2:131194916-131194942 (+)	101 bp
Tssr20264	Chr2:131235009-131235020 (+)	40,187 bp