Gm57421 Gene Detail

Summary

• Symbol
  Gm57421
• Name
  predicted gene, 57421

• Feature Type
  lncRNA gene
• IDs
  MGI:7338755
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:152063878-152069465 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338755	lncRNA gene	Chr2:152063878-152069465 (-)
129S1/SvImJ	ENSMUSG00200031339	lncRNA gene	Chr2:148969666-148971008 (-)
A/J	ENSMUSG00195021658	lncRNA gene	Chr2:149252763-149254105 (-)
AKR/J	ENSMUSG00220047038	lncRNA gene	Chr2:148576291-148577633 (-)
BALB/cJ	ENSMUSG00180044987	lncRNA gene	Chr2:148737810-148739152 (-)
C3H/HeJ	ENSMUSG00175047346	lncRNA gene	Chr2:149484031-149485372 (-)
C57BL/6NJ	ENSMUSG00215036594	lncRNA gene	Chr2:148911000-148912342 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043947	lncRNA gene	Chr2:147833921-147835262 (-)
CBA/J	ENSMUSG00210046484	lncRNA gene	Chr2:149420544-149421886 (-)
DBA/2J	ENSMUSG00185049888	lncRNA gene	Chr2:149071007-149072349 (-)
FVB/NJ	ENSMUSG00205038877	lncRNA gene	Chr2:148167742-148169084 (-)
JF1/MsJ	ENSUMUG00000048172	lncRNA gene	Chr2:148747524-148748865 (-)
LP/J	ENSMUSG00230037199	lncRNA gene	Chr2:150722084-150723426 (-)
NOD/ShiLtJ	ENSMUSG00190042000	lncRNA gene	Chr2:148846995-148848336 (-)
NZO/HlLtJ	ENSMUSG00225005928	lncRNA gene	Chr2:158759152-158760494 (-)
PWK/PhJ	ENSLUMG00010047807	lncRNA gene	Chr2:148717253-148718594 (-)
SPRET/EiJ	ENSMSPG00010028832	lncRNA gene	Chr2:151443210-151444546 (-)
WSB/EiJ	ENSIUOG00005048695	lncRNA gene	Chr2:148583396-148584738 (-)

Homology

• Gene Tree
  Gm57421
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120026 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120026	Ensembl Gene Model | MGI Sequence Detail	5588	C57BL/6J
transcript	ENSMUST00000241073	Ensembl | MGI Sequence Detail	2241	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26785	Chr2:152069151-152069184 (-)	297 bp
Tssr26784	Chr2:152068641-152068673 (-)	808 bp