Gm57420 Gene Detail

Summary

• Symbol
  Gm57420
• Name
  predicted gene, 57420

• Feature Type
  lncRNA gene
• IDs
  MGI:7338753
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:14078386-14078864 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338753	lncRNA gene	Chr2:14078386-14078864 (+)
129S1/SvImJ	ENSMUSG00200042756	lncRNA gene	Chr2:11009356-11009834 (+)
A/J	ENSMUSG00195020216	lncRNA gene	Chr2:11100038-11100516 (+)
AKR/J	ENSMUSG00220014134	lncRNA gene	Chr2:11061597-11062075 (+)
BALB/cJ	ENSMUSG00180038911	lncRNA gene	Chr2:11149759-11150237 (+)
C3H/HeJ	ENSMUSG00175023374	lncRNA gene	Chr2:11089168-11089646 (+)
C57BL/6NJ	ENSMUSG00215035635	lncRNA gene	Chr2:11164017-11164495 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004556	lncRNA gene	Chr2:10960289-10960767 (+)
CBA/J	ENSMUSG00210004013	lncRNA gene	Chr2:11129885-11130363 (+)
DBA/2J	ENSMUSG00185039528	lncRNA gene	Chr2:11044781-11045259 (+)
FVB/NJ	ENSMUSG00205015637	lncRNA gene	Chr2:11024075-11024553 (+)
JF1/MsJ	ENSUMUG00000004879	lncRNA gene	Chr2:11003246-11003724 (+)
LP/J	ENSMUSG00230020812	lncRNA gene	Chr2:12986762-12987240 (+)
NOD/ShiLtJ	ENSMUSG00190015010	lncRNA gene	Chr2:11110354-11110832 (+)
NZO/HlLtJ	ENSMUSG00225001500	lncRNA gene	Chr2:20736889-20737367 (+)
PWK/PhJ	ENSLUMG00010033272	lncRNA gene	Chr2:11136826-11137304 (+)
SPRET/EiJ	ENSMSPG00010015965	lncRNA gene	Chr2:11312897-11313375 (+)
WSB/EiJ	ENSIUOG00005015842	lncRNA gene	Chr2:11154118-11154596 (+)

Homology

• Gene Tree
  Gm57420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120463 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120463	Ensembl Gene Model | MGI Sequence Detail	479	C57BL/6J
transcript	ENSMUST00000243495	Ensembl | MGI Sequence Detail	479	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16223	Chr2:14078418-14078436 (+)	41 bp
Tssr16224	Chr2:14078440-14078483 (+)	76 bp