Gm57419 Gene Detail

Summary

• Symbol
  Gm57419
• Name
  predicted gene, 57419

• Feature Type
  lncRNA gene
• IDs
  MGI:7338751
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:105491123-105491909 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338751	lncRNA gene	Chr2:105491123-105491909 (+)
129S1/SvImJ	ENSMUSG00200008584	lncRNA gene	Chr2:102315038-102315804 (+)
A/J	ENSMUSG00195031324	lncRNA gene	Chr2:102476380-102477150 (+)
AKR/J	ENSMUSG00220005063	lncRNA gene	Chr2:102221806-102222576 (+)
BALB/cJ	ENSMUSG00180034529	lncRNA gene	Chr2:102271809-102272579 (+)
C3H/HeJ	ENSMUSG00175032626	lncRNA gene	Chr2:102570901-102571651 (+)
C57BL/6NJ	ENSMUSG00215027554	lncRNA gene	Chr2:102378169-102378955 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005945	lncRNA gene	Chr2:101632087-101632828 (+)
CBA/J	ENSMUSG00210041085	lncRNA gene	Chr2:102549482-102550250 (+)
DBA/2J	ENSMUSG00185040839	lncRNA gene	Chr2:102268406-102269174 (+)
FVB/NJ	ENSMUSG00205019053	lncRNA gene	Chr2:101607782-101608558 (+)
JF1/MsJ	ENSUMUG00000004308	lncRNA gene	Chr2:101980513-101981263 (+)
LP/J	ENSMUSG00230006729	lncRNA gene	Chr2:104017714-104018482 (+)
NOD/ShiLtJ	ENSMUSG00190016193	lncRNA gene	Chr2:102396313-102397081 (+)
NZO/HlLtJ	ENSMUSG00225008809	lncRNA gene	Chr2:111926564-111927346 (+)
PWK/PhJ	ENSLUMG00010024503	lncRNA gene	Chr2:101983492-101984246 (+)
SPRET/EiJ	ENSMSPG00010037501	lncRNA gene	Chr2:104026420-104027188 (+)
WSB/EiJ	ENSIUOG00005033579	lncRNA gene	Chr2:102071060-102071832 (+)

Homology

• Gene Tree
  Gm57419
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120389 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120389	Ensembl Gene Model | MGI Sequence Detail	787	C57BL/6J
transcript	ENSMUST00000242980	Ensembl | MGI Sequence Detail	787	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57419:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19248	Chr2:105491118-105491130 (+)	1 bp
Tssr19249	Chr2:105491145-105491157 (+)	28 bp