Gm57417 Gene Detail

Summary

• Symbol
  Gm57417
• Name
  predicted gene, 57417

• Feature Type
  lncRNA gene
• IDs
  MGI:7338747
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:179918023-179918672 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338747	lncRNA gene	Chr2:179918023-179918672 (-)
129S1/SvImJ	ENSMUSG00200002690	lncRNA gene	Chr2:175940187-175940834 (-)
A/J	ENSMUSG00195001133	lncRNA gene	Chr2:176177471-176178118 (-)
AKR/J	ENSMUSG00220000125	lncRNA gene	Chr2:173856060-173856707 (-)
BALB/cJ	ENSMUSG00180000735	lncRNA gene	Chr2:173980093-173980740 (-)
C3H/HeJ	ENSMUSG00175004437	lncRNA gene	Chr2:175138066-175138713 (-)
C57BL/6NJ	ENSMUSG00215002621	lncRNA gene	Chr2:174079211-174079858 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000814	lncRNA gene	Chr2:173426355-173427002 (-)
CBA/J	ENSMUSG00210001488	lncRNA gene	Chr2:174458142-174458789 (-)
DBA/2J	ENSMUSG00185021486	lncRNA gene	Chr2:175697492-175698139 (-)
FVB/NJ	ENSMUSG00205002407	lncRNA gene	Chr2:174504890-174505537 (-)
JF1/MsJ	ENSUMUG00000035154	lncRNA gene	Chr2:176875191-176875838 (-)
LP/J	ENSMUSG00230026996	lncRNA gene	Chr2:177591149-177591796 (-)
NOD/ShiLtJ	ENSMUSG00190016652	lncRNA gene	Chr2:173999759-174000406 (-)
NZO/HlLtJ	ENSMUSG00225006974	lncRNA gene	Chr2:185678076-185678723 (-)
PWK/PhJ	ENSLUMG00010000401	lncRNA gene	Chr2:174302509-174303156 (-)
SPRET/EiJ	ENSMSPG00010004214	lncRNA gene	Chr2:176778118-176778765 (-)
WSB/EiJ	ENSIUOG00005000222	lncRNA gene	Chr2:174022730-174023377 (-)

Homology

• Gene Tree
  Gm57417
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120040 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120040	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000241110	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28092	Chr2:179918645-179918665 (-)	17 bp