Gm57416 Gene Detail

Summary

• Symbol
  Gm57416
• Name
  predicted gene, 57416

• Feature Type
  lncRNA gene
• IDs
  MGI:7338745
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:27485201-27486738 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338745	lncRNA gene	Chr2:27485201-27486738 (-)
129S1/SvImJ	ENSMUSG00200053534	lncRNA gene	Chr2:24445826-24446546 (-)
A/J	ENSMUSG00195051406	lncRNA gene	Chr2:24548277-24548997 (-)
AKR/J	ENSMUSG00220053807	lncRNA gene	Chr2:24666018-24666738 (-)
BALB/cJ	ENSMUSG00180054447	lncRNA gene	Chr2:24567272-24567992 (-)
C3H/HeJ	ENSMUSG00175053833	lncRNA gene	Chr2:24536602-24537322 (-)
C57BL/6NJ	ENSMUSG00215050457	lncRNA gene	Chr2:24595346-24596066 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053525	lncRNA gene	Chr2:24279204-24279924 (-)
CBA/J	ENSMUSG00210018203	lncRNA gene	Chr2:24570235-24570955 (-)
DBA/2J	ENSMUSG00185053573	lncRNA gene	Chr2:24462289-24463009 (-)
FVB/NJ	ENSMUSG00205050651	lncRNA gene	Chr2:24314082-24314802 (-)
JF1/MsJ	ENSUMUG00000056465	lncRNA gene	Chr2:24369958-24370678 (-)
LP/J	ENSMUSG00230046059	lncRNA gene	Chr2:26381728-26382448 (-)
NOD/ShiLtJ	ENSMUSG00190053051	lncRNA gene	Chr2:24555076-24555796 (-)
NZO/HlLtJ	ENSMUSG00225011306	lncRNA gene	Chr2:34139215-34139935 (-)
PWK/PhJ	ENSLUMG00010052469	lncRNA gene	Chr2:24448179-24448899 (-)
SPRET/EiJ	ENSMSPG00010046074	lncRNA gene	Chr2:25178357-25179080 (-)
WSB/EiJ	ENSIUOG00005052672	lncRNA gene	Chr2:24418462-24419182 (-)

Homology

• Gene Tree
  Gm57416
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120033 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120033	Ensembl Gene Model | MGI Sequence Detail	1538	C57BL/6J
transcript	ENSMUST00000241095	Ensembl | MGI Sequence Detail	1538	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23232	Chr2:27486371-27486393 (-)	356 bp