Gm57413 Gene Detail

Summary

• Symbol
  Gm57413
• Name
  predicted gene, 57413

• Feature Type
  lncRNA gene
• IDs
  MGI:7338739
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:40646285-40658742 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  415 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338739	lncRNA gene	Chr11:40646285-40658742 (+)
129S1/SvImJ	ENSMUSG00200007234	lncRNA gene	Chr11:37756062-37756742 (+)
A/J	ENSMUSG00195007257	lncRNA gene	Chr11:37669431-37670111 (+)
AKR/J	ENSMUSG00220003354	lncRNA gene	Chr11:37859367-37860047 (+)
BALB/cJ	ENSMUSG00180001784	lncRNA gene	Chr11:37666482-37667162 (+)
C3H/HeJ	ENSMUSG00175003849	lncRNA gene	Chr11:37659082-37659762 (+)
C57BL/6NJ	ENSMUSG00215010353	lncRNA gene	Chr11:37573064-37573744 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013061	lncRNA gene	Chr11:37420153-37420828 (+)
CBA/J	ENSMUSG00210006898	lncRNA gene	Chr11:37554383-37555063 (+)
DBA/2J	ENSMUSG00185010471	lncRNA gene	Chr11:37696599-37697279 (+)
FVB/NJ	ENSMUSG00205012179	lncRNA gene	Chr11:37694924-37695604 (+)
JF1/MsJ	ENSUMUG00000005256	lncRNA gene	Chr11:37973185-37973861 (+)
LP/J	ENSMUSG00230004150	lncRNA gene	Chr11:38886641-38887321 (+)
NOD/ShiLtJ	ENSMUSG00190007388	lncRNA gene	Chr11:37758990-37759670 (+)
NZO/HlLtJ	ENSMUSG00225036352	lncRNA gene	Chr11:40801435-40802115 (+)
PWK/PhJ	ENSLUMG00010007404	lncRNA gene	Chr11:37558143-37558818 (+)
SPRET/EiJ	ENSMSPG00010002283	lncRNA gene	Chr11:38082247-38082925 (+)
WSB/EiJ	ENSIUOG00005002095	lncRNA gene	Chr11:37602128-37602804 (+)

Homology

• Gene Tree
  Gm57413
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121253 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121253	Ensembl Gene Model | MGI Sequence Detail	12458	C57BL/6J
transcript	ENSMUST00000379439	Ensembl | MGI Sequence Detail	1174	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57413:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100968	Chr11:40646272-40646293 (+)	-2 bp
Tssr100969	Chr11:40646303-40646328 (+)	31 bp