Gm57408 Gene Detail

Summary

• Symbol
  Gm57408
• Name
  predicted gene, 57408

• Feature Type
  lncRNA gene
• IDs
  MGI:7338729
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:87481106-87484314 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338729	lncRNA gene	Chr11:87481106-87484314 (-)
129S1/SvImJ	ENSMUSG00200020553	lncRNA gene	Chr11:84610558-84612047 (-)
A/J	ENSMUSG00195009656	lncRNA gene	Chr11:84465411-84466900 (-)
AKR/J	ENSMUSG00220012194	lncRNA gene	Chr11:84664954-84666444 (-)
BALB/cJ	ENSMUSG00180011445	lncRNA gene	Chr11:84672181-84673671 (-)
C3H/HeJ	ENSMUSG00175033480	lncRNA gene	Chr11:84611998-84613487 (-)
C57BL/6NJ	ENSMUSG00215030793	lncRNA gene	Chr11:84256721-84258210 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017142	lncRNA gene	Chr11:84166925-84168411 (-)
CBA/J	ENSMUSG00210039723	lncRNA gene	Chr11:84429558-84431047 (-)
DBA/2J	ENSMUSG00185020957	lncRNA gene	Chr11:84746260-84747749 (-)
FVB/NJ	ENSMUSG00205022615	lncRNA gene	Chr11:84625180-84626670 (-)
JF1/MsJ	ENSUMUG00000030516	lncRNA gene	Chr11:85070774-85072264 (-)
LP/J	ENSMUSG00230030463	lncRNA gene	Chr11:85779525-85781014 (-)
NOD/ShiLtJ	ENSMUSG00190020755	lncRNA gene	Chr11:84771996-84773486 (-)
NZO/HlLtJ	ENSMUSG00225039781	lncRNA gene	Chr11:87895423-87896917 (-)
PWK/PhJ	ENSLUMG00010033825	lncRNA gene	Chr11:84629613-84631104 (-)
SPRET/EiJ	ENSMSPG00010030895	lncRNA gene	Chr11:85032196-85033714 (-)
WSB/EiJ	ENSIUOG00005008012	lncRNA gene	Chr11:84584065-84585553 (-)

Homology

• Gene Tree
  Gm57408
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120117 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120117	Ensembl Gene Model | MGI Sequence Detail	3209	C57BL/6J
transcript	ENSMUST00000241467	Ensembl | MGI Sequence Detail	1576	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57408:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109967	Chr11:87482577-87482599 (-)	1,726 bp
Tssr109966	Chr11:87482538-87482549 (-)	1,770 bp
Tssr109965	Chr11:87482382-87482386 (-)	1,930 bp