Gm57406 Gene Detail

Summary

• Symbol
  Gm57406
• Name
  predicted gene, 57406

• Feature Type
  lncRNA gene
• IDs
  MGI:7338725
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:33481420-33496129 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  425 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338725	lncRNA gene	Chr11:33481420-33496129 (-)
129S1/SvImJ	ENSMUSG00200010391	lncRNA gene	Chr11:30519797-30524930 (-)
A/J	ENSMUSG00195014261	lncRNA gene	Chr11:30426780-30431930 (-)
AKR/J	ENSMUSG00220008743	lncRNA gene	Chr11:30621766-30626919 (-)
BALB/cJ	ENSMUSG00180008266	lncRNA gene	Chr11:30452054-30457203 (-)
C3H/HeJ	ENSMUSG00175017494	lncRNA gene	Chr11:30433676-30438824 (-)
C57BL/6NJ	ENSMUSG00215010975	lncRNA gene	Chr11:30391531-30396661 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029551	lncRNA gene	Chr11:30322598-30327768 (-)
CBA/J	ENSMUSG00210010106	lncRNA gene	Chr11:30322887-30328038 (-)
DBA/2J	ENSMUSG00185019564	lncRNA gene	Chr11:30512556-30517703 (-)
FVB/NJ	ENSMUSG00205022392	lncRNA gene	Chr11:30511263-30516412 (-)
JF1/MsJ	ENSUMUG00000005264	lncRNA gene	Chr11:30774630-30779706 (-)
LP/J	ENSMUSG00230004033	lncRNA gene	Chr11:31669897-31675043 (-)
NOD/ShiLtJ	ENSMUSG00190025421	lncRNA gene	Chr11:30604699-30609775 (-)
NZO/HlLtJ	ENSMUSG00225030921	lncRNA gene	Chr11:33568034-33573193 (-)
PWK/PhJ	ENSLUMG00010017684	lncRNA gene	Chr11:30430695-30435792 (-)
SPRET/EiJ	ENSMSPG00010020186	lncRNA gene	Chr11:30803842-30809082 (-)
WSB/EiJ	ENSIUOG00005013769	lncRNA gene	Chr11:30506354-30511503 (-)

Homology

• Gene Tree
  Gm57406
  

Sequences &
Gene Models

• All Sequences
  52

• Ensembl
  ENSMUSG00000120610 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120610	Ensembl Gene Model | MGI Sequence Detail	14710	C57BL/6J
transcript	ENSMUST00000340361	Ensembl | MGI Sequence Detail	2791	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107339	Chr11:33487432-33487452 (-)	8,687 bp
Tssr107338	Chr11:33487401-33487407 (-)	8,725 bp
Tssr107337	Chr11:33487205-33487224 (-)	8,914 bp