Gm57404 Gene Detail

Summary

• Symbol
  Gm57404
• Name
  predicted gene, 57404

• Feature Type
  lncRNA gene
• IDs
  MGI:7338721
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:97078153-97081965 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338721	lncRNA gene	Chr11:97078153-97081965 (+)
129S1/SvImJ	ENSMUSG00200053002	lncRNA gene	Chr11:94325396-94327038 (+)
A/J	ENSMUSG00195052796	lncRNA gene	Chr11:94050052-94051694 (+)
AKR/J	ENSMUSG00220051844	lncRNA gene	Chr11:94309172-94310814 (+)
BALB/cJ	ENSMUSG00180052793	lncRNA gene	Chr11:94307886-94309528 (+)
C3H/HeJ	ENSMUSG00175053056	lncRNA gene	Chr11:94305475-94307117 (+)
C57BL/6NJ	ENSMUSG00215054385	lncRNA gene	Chr11:93896300-93897942 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051184	lncRNA gene	Chr11:93753870-93755515 (+)
CBA/J	ENSMUSG00210053597	lncRNA gene	Chr11:94012225-94013867 (+)
DBA/2J	ENSMUSG00185052986	lncRNA gene	Chr11:94355398-94357040 (+)
FVB/NJ	ENSMUSG00205049985	lncRNA gene	Chr11:94210129-94211771 (+)
JF1/MsJ	ENSUMUG00000056023	lncRNA gene	Chr11:94665825-94667463 (+)
LP/J	ENSMUSG00230050974	lncRNA gene	Chr11:95408381-95410023 (+)
NOD/ShiLtJ	ENSMUSG00190051832	lncRNA gene	Chr11:94400031-94401673 (+)
NZO/HlLtJ	ENSMUSG00225052580	lncRNA gene	Chr11:97463663-97465305 (+)
PWK/PhJ	ENSLUMG00010052321	lncRNA gene	Chr11:94208833-94210471 (+)
SPRET/EiJ	ENSMSPG00010050575	lncRNA gene	Chr11:94707770-94709599 (+)
WSB/EiJ	ENSIUOG00005051904	lncRNA gene	Chr11:94155948-94157590 (+)

Homology

• Gene Tree
  Gm57404
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121247 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121247	Ensembl Gene Model | MGI Sequence Detail	3813	C57BL/6J
transcript	ENSMUST00000247578	Ensembl | MGI Sequence Detail	2226	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57404:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104604	Chr11:97078526-97078537 (+)	379 bp
Tssr104605	Chr11:97079294-97079307 (+)	1,148 bp
Tssr104606	Chr11:97079380-97079406 (+)	1,240 bp