Gm57402 Gene Detail

Summary

• Symbol
  Gm57402
• Name
  predicted gene, 57402

• Feature Type
  lncRNA gene
• IDs
  MGI:7338717
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:106047025-106047482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338717	lncRNA gene	Chr11:106047025-106047482 (+)
129S1/SvImJ	ENSMUSG00200033079	lncRNA gene	Chr11:103354254-103354711 (+)
A/J	ENSMUSG00195022786	lncRNA gene	Chr11:103052948-103053405 (+)
AKR/J	ENSMUSG00220036744	lncRNA gene	Chr11:103266247-103266704 (+)
BALB/cJ	ENSMUSG00180021015	lncRNA gene	Chr11:103375520-103375977 (+)
C3H/HeJ	ENSMUSG00175013945	lncRNA gene	Chr11:103324595-103325052 (+)
C57BL/6NJ	ENSMUSG00215022306	lncRNA gene	Chr11:102892622-102893079 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041349	lncRNA gene	Chr11:102797478-102797935 (+)
CBA/J	ENSMUSG00210013764	lncRNA gene	Chr11:103033630-103034087 (+)
DBA/2J	ENSMUSG00185021410	lncRNA gene	Chr11:103374426-103374883 (+)
FVB/NJ	ENSMUSG00205041344	lncRNA gene	Chr11:103179887-103180344 (+)
JF1/MsJ	ENSUMUG00000027777	lncRNA gene	Chr11:103638489-103638946 (+)
LP/J	ENSMUSG00230035990	lncRNA gene	Chr11:104426683-104427140 (+)
NOD/ShiLtJ	ENSMUSG00190023133	lncRNA gene	Chr11:103373015-103373472 (+)
NZO/HlLtJ	ENSMUSG00225053267	lncRNA gene	Chr11:106466926-106467383 (+)
PWK/PhJ	ENSLUMG00010016503	lncRNA gene	Chr11:103161018-103161475 (+)
SPRET/EiJ	ENSMSPG00010039485	lncRNA gene	Chr11:103672843-103673301 (+)
WSB/EiJ	ENSIUOG00005018081	lncRNA gene	Chr11:103159009-103159466 (+)

Homology

• Gene Tree
  Gm57402
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121066 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121066	Ensembl Gene Model | MGI Sequence Detail	458	C57BL/6J
transcript	ENSMUST00000247056	Ensembl | MGI Sequence Detail	458	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57402:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105492	Chr11:106047038-106047045 (+)	17 bp