Gm57400 Gene Detail

Summary

• Symbol
  Gm57400
• Name
  predicted gene, 57400

• Feature Type
  lncRNA gene
• IDs
  MGI:7338713
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:102298834-102299297 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338713	lncRNA gene	Chr11:102298834-102299297 (-)
129S1/SvImJ	ENSMUSG00200053625	lncRNA gene	Chr11:99585155-99585618 (-)
A/J	ENSMUSG00195052730	lncRNA gene	Chr11:99290514-99290977 (-)
AKR/J	ENSMUSG00220051959	lncRNA gene	Chr11:99500569-99501032 (-)
BALB/cJ	ENSMUSG00180052139	lncRNA gene	Chr11:99632814-99633277 (-)
C3H/HeJ	ENSMUSG00175052640	lncRNA gene	Chr11:99558687-99559150 (-)
C57BL/6NJ	ENSMUSG00215054232	lncRNA gene	Chr11:99120723-99121186 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051073	lncRNA gene	Chr11:99059644-99060107 (-)
CBA/J	ENSMUSG00210053538	lncRNA gene	Chr11:99266519-99266982 (-)
DBA/2J	ENSMUSG00185052662	lncRNA gene	Chr11:99608542-99609005 (-)
FVB/NJ	ENSMUSG00205050871	lncRNA gene	Chr11:99451444-99451907 (-)
JF1/MsJ	ENSUMUG00000056537	lncRNA gene	Chr11:99871144-99871607 (-)
LP/J	ENSMUSG00230051045	lncRNA gene	Chr11:100661077-100661540 (-)
NOD/ShiLtJ	ENSMUSG00190052643	lncRNA gene	Chr11:99647082-99647545 (-)
NZO/HlLtJ	ENSMUSG00225053377	lncRNA gene	Chr11:102683740-102684203 (-)
PWK/PhJ	ENSLUMG00010052407	lncRNA gene	Chr11:99404984-99405447 (-)
SPRET/EiJ	ENSMSPG00010051241	lncRNA gene	Chr11:99902153-99902629 (-)
WSB/EiJ	ENSIUOG00005051176	lncRNA gene	Chr11:99402136-99402599 (-)

Homology

• Gene Tree
  Gm57400
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120765 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120765	Ensembl Gene Model | MGI Sequence Detail	464	C57BL/6J
transcript	ENSMUST00000245707	Ensembl | MGI Sequence Detail	464	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57400:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111073	Chr11:102299283-102299299 (-)	6 bp