Gm57399 Gene Detail

Summary

• Symbol
  Gm57399
• Name
  predicted gene, 57399

• Feature Type
  lncRNA gene
• IDs
  MGI:7338711
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:84709665-84711185 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338711	lncRNA gene	Chr11:84709665-84711185 (+)
129S1/SvImJ	ENSMUSG00200020430	lncRNA gene	Chr11:81854524-81856032 (+)
A/J	ENSMUSG00195009327	lncRNA gene	Chr11:81709055-81710563 (+)
AKR/J	ENSMUSG00220012098	lncRNA gene	Chr11:81918084-81919595 (+)
BALB/cJ	ENSMUSG00180011480	lncRNA gene	Chr11:81900313-81901821 (+)
C3H/HeJ	ENSMUSG00175034540	lncRNA gene	Chr11:81855945-81857453 (+)
C57BL/6NJ	ENSMUSG00215033817	lncRNA gene	Chr11:81483964-81485472 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045433	lncRNA gene	Chr11:81418424-81419945 (+)
CBA/J	ENSMUSG00210039651	lncRNA gene	Chr11:81673590-81675098 (+)
DBA/2J	ENSMUSG00185020001	lncRNA gene	Chr11:81999675-82001186 (+)
FVB/NJ	ENSMUSG00205021960	lncRNA gene	Chr11:81787998-81789506 (+)
JF1/MsJ	ENSUMUG00000028055	lncRNA gene	Chr11:82320991-82322502 (+)
LP/J	ENSMUSG00230029910	lncRNA gene	Chr11:83023660-83025168 (+)
NOD/ShiLtJ	ENSMUSG00190020426	lncRNA gene	Chr11:82000140-82001648 (+)
NZO/HlLtJ	ENSMUSG00225040077	lncRNA gene	Chr11:85128598-85130106 (+)
PWK/PhJ	ENSLUMG00010025664	lncRNA gene	Chr11:81822323-81823834 (+)
SPRET/EiJ	ENSMSPG00010029641	lncRNA gene	Chr11:82289935-82291438 (+)
WSB/EiJ	ENSIUOG00005008065	lncRNA gene	Chr11:81808738-81810246 (+)

Homology

• Gene Tree
  Gm57399
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121192 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121192	Ensembl Gene Model | MGI Sequence Detail	1521	C57BL/6J
transcript	ENSMUST00000247423	Ensembl | MGI Sequence Detail	1521	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57399:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103807	Chr11:84709658-84709696 (+)	12 bp